View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_33 (Length: 238)
Name: NF21657_low_33
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 6957659 - 6957796
Alignment:
| Q |
1 |
tgtataggatggttatacaaaagaggtgattggtcaagagtcagtgaaggtacttgttgctacaaaagcaaagcctaacaaggatataaggagctcactt |
100 |
Q |
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| T |
6957659 |
tgtaaaggatggttatacaaaagaggtgaatggtcaggagtcagtgaaggtacttgttgctacaaaagcaaagcctaacaaggatataaggagctcactt |
6957758 |
T |
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| Q |
101 |
gatagagaatacttcaaaagcttcttaaatgtatgtcc |
138 |
Q |
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| T |
6957759 |
gatagagaatacttcaaaagcttcttaaatgtatgtcc |
6957796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 6957822 - 6957878
Alignment:
| Q |
165 |
caaacttctgtaagattaatcactgaattcttaaaaatgacatgatcattttcatct |
221 |
Q |
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| T |
6957822 |
caaacttctgtaagattaatcgctgaattcttaaaaatgacatgatcattttcatct |
6957878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 49102555 - 49102422
Alignment:
| Q |
3 |
tataggatggttatacaaaagaggtgattggtcaagagtcagtgaaggtacttgttgctacaaaagcaaagcctaacaaggatataaggagctcacttga |
102 |
Q |
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| T |
49102555 |
tataggatggttacacaaaagaggtacgtggtgaagactcggtgagggtacttgttgctacaaaagcaaagcctaaccaagatgttggaagttcgcttga |
49102456 |
T |
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| Q |
103 |
tagagaatacttcaaaagcttcttaaatgtatgt |
136 |
Q |
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| T |
49102455 |
cagggaatatttcataaactttttaaatgtatgt |
49102422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 49114742 - 49114609
Alignment:
| Q |
3 |
tataggatggttatacaaaagaggtgattggtcaagagtcagtgaaggtacttgttgctacaaaagcaaagcctaacaaggatataaggagctcacttga |
102 |
Q |
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||||||||||||| |||||||||| ||||| || || |||| ||||||||||||||||||||||||||||||| ||| | |||| |||||||| |
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| T |
49114742 |
tataggatggttacacaaaagaggaaggtggtccaggctctgtgagggtacttgttgctacaaaagcaaagcctaaccgagatgttgggagttcacttga |
49114643 |
T |
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| Q |
103 |
tagagaatacttcaaaagcttcttaaatgtatgt |
136 |
Q |
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| T |
49114642 |
cagggaatatttcataagatttttagatgtatgt |
49114609 |
T |
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