View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_34 (Length: 226)
Name: NF21657_low_34
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_34 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 32617803 - 32618023
Alignment:
| Q |
6 |
accactgacacccattaagtccataaataaaacgtctaaagcaaaaattattttcttattgcagtagcaaggatgaaaacaataaaataggccaaatttt |
105 |
Q |
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| T |
32617803 |
accactgaaactcattaagtccataactaaaatgtctaaagcaaaaattattttcttattgcagtagcaaggattaaaacaataaaatatgccaaatttt |
32617902 |
T |
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| Q |
106 |
atcactgatatttatactccttcaaatcaaaggtgttcaaattatagagtaaaagttaaatatcatagcatcaatggaaggtgaggtctatttgtgatct |
205 |
Q |
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|||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32617903 |
atcactgatatttatacttcttcgaaccaacggtgttcaaattatagagtaaaagttaaatatcatagcatcaatggaaggtgaggtctatttgtgatct |
32618002 |
T |
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| Q |
206 |
aaatataatcatcttaaaatt |
226 |
Q |
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| T |
32618003 |
aaatataatcatcttaaaatt |
32618023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 14605103 - 14604891
Alignment:
| Q |
17 |
ccattaagtccataaataaaacgtctaaagcaaaaattattttcttattgcagtagcaaggatgaaaacaataaaataggccaaattttat---cactga |
113 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
14605103 |
ccattaagtccataactaaaatgtctaaagcaaaaattattttcttattgcagtagcaaggattaaaacaataaaataggccaaattttattatcactga |
14605004 |
T |
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| Q |
114 |
tatttatactccttcaaatcaaaggtgttcaaattatagagtaaaagttaaatatcatagcatcaatggaaggtgaggtctatttgtgatctaaatataa |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14605003 |
tatttatactccttcaaaccaaaggtgttcaaattatagagtaaaagttaaatatcatagcatcaatggaaggtgaggtctacttgtgatctaaatataa |
14604904 |
T |
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| Q |
214 |
tcatcttaaaatt |
226 |
Q |
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||||||||||||| |
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| T |
14604903 |
tcatcttaaaatt |
14604891 |
T |
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