View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_36 (Length: 219)
Name: NF21657_low_36
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_36 |
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| [»] scaffold0007 (3 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 149084 - 148937
Alignment:
| Q |
62 |
tcgatcgttagttaactgcagttgatatacgaaaataaacaattttgaaaaggagaagttcaattttcatttattttttgttgagaaaatagggttttaa |
161 |
Q |
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| T |
149084 |
tcgatcattagttaactgcagttgatatatgaaaataaacgattttgaaatggagtagatcaattttcatttattttttgttgagaaaatagggttttaa |
148985 |
T |
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| Q |
162 |
gttaaaaagaaaataattatgaaagaggggtgatagatgatagtgatg |
209 |
Q |
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| T |
148984 |
gttaaaaagaaaataattatgaaagaggggtggtagatgatagtgatg |
148937 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 149459 - 149381
Alignment:
| Q |
131 |
tttattttttgttgagaaaatagggttttaagttaaaaagaaaataattatgaaagaggggtgatagatgatagtgatg |
209 |
Q |
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| T |
149459 |
tttattttttgttgagaaaatagggttttaagttaaaaagaaaataattttgaaaaaggggtgataaatgatagtgatg |
149381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 148922 - 148854
Alignment:
| Q |
142 |
ttgagaaaatagggttttaagttaaaaagaaaataattatgaaaga-ggggtgatagatgatagtgatg |
209 |
Q |
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| T |
148922 |
ttgagaaattagggtttaaagttaaaaagaaaataatgttaaaagagggggtgatagatgacagtgatg |
148854 |
T |
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