View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_4 (Length: 644)
Name: NF21657_low_4
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 218 - 626
Target Start/End: Original strand, 33771419 - 33771827
Alignment:
| Q |
218 |
ccatttacccgaatgttatctactaccaatgcaatttccctcatcttccgctcccgtgcttctgccggagaccccacctccttccctcgtctcttccact |
317 |
Q |
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| T |
33771419 |
ccatttacccgaatgttatctactaccaatgcaatttccctcatcttccgctcccgtgcttctgccggagaccccacctccttccctcgtctcttccact |
33771518 |
T |
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| Q |
318 |
cctcactctcactgcccaccacttctggaagactacctgccgttgaaactggcggcgccgcagttagacgcgccggtgggaacgagtggatgaaggtgaa |
417 |
Q |
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| T |
33771519 |
cctcactctcactgcccaccacttcgggaagactacctgccgttgaaactggcggcgccgcagttagacgcgccggtgggaacgagtggatgaaggtgaa |
33771618 |
T |
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| Q |
418 |
agcgaaggagagaaaatggtcacgaaatagagaaggttacatggttgataatggtgagcctcttccacttcccatgacttatcctgattcttctcctgtt |
517 |
Q |
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| T |
33771619 |
agcgaaggagagaaaatggtcacgaaatagagaaggttacatgtttgataatggtgagcctcttccacttcccatgacttatcctgattcttctcctgtt |
33771718 |
T |
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| Q |
518 |
tcgtctcaagagattgatcagcgtcttcaatgtgaccccaaacttgaggtactatttctctctttcgtttcacttattttaccttatctacttacataac |
617 |
Q |
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| T |
33771719 |
tcgtctcaagagattgatcagcgtcttcaatgtgaccccaaacttgaggtactatttctctctttcgtttcacttattttaccttatctacttacataac |
33771818 |
T |
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| Q |
618 |
caaacaact |
626 |
Q |
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| T |
33771819 |
caaacaact |
33771827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 33771222 - 33771365
Alignment:
| Q |
1 |
cacacagttccataaataagtaaaagtgatagcatggcagagactcgcaatttcagccaatacatacnnnnnnnnnnnnnnnnnntaagtagcagcagca |
100 |
Q |
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| T |
33771222 |
cacacagttccataaataagtaaaagtgatagcatggcagagactcgcaatttcagccaatacatacagagaag------------aagaagaataagta |
33771309 |
T |
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| Q |
101 |
ggagcagcataaaatccgaatttgactcttctctgaaattatcgcattagatctca |
156 |
Q |
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| T |
33771310 |
ggagcagcataaaatccgaatttgactcttctctgaaattatcgcattagatctca |
33771365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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