View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_6 (Length: 577)
Name: NF21657_low_6
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 42306919 - 42307270
Alignment:
| Q |
21 |
tcataatccatgaggggattggaagctacctggccccaacccatcccctccaaaacgnnnnnnnntcatgcttatatcctgaatttggcaagaaaataag |
120 |
Q |
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| T |
42306919 |
tcataatccatgaggggattggaagctacctggccccaacccatcccctccaaaacgaaaaaaaatcatgcttatatcctgaatttggcaagaaaataag |
42307018 |
T |
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| Q |
121 |
aactttaattatgatgatactgcctttgcctataattaccaagtatcattataataacgtaaaacaaaataccatcaatggtttcaaaacgctcattagc |
220 |
Q |
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| T |
42307019 |
aactttaattatgatgatactgcctttgcctataattaccaagtatcattataataacgtaaaacaaaataccatcaatggtttcaaaacgctcattagc |
42307118 |
T |
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| Q |
221 |
tcacacacactcacacaatttatggtaagataagatgtgtaatttatataaccgatttgattgaaattccactaaaagtaaaaatagattctcagaagga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307119 |
tcacacacactcacacaatttatggtaagataagatgtgtaatttatataaccgatttgattgaaattccactaaaagtaaaaatagattctcagaagga |
42307218 |
T |
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| Q |
321 |
acttcaacttaaagaaccttgctttagtataatgacattgcattacaccccc |
372 |
Q |
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| T |
42307219 |
acttcaacttaaagaaccttgctttagtataatgacattgcattacaccccc |
42307270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 461 - 577
Target Start/End: Original strand, 42307385 - 42307501
Alignment:
| Q |
461 |
tcgagttaatgcatttgattcaaaatttgcactaaatacatcgacttatacgaactctttttaacttatattttgggagtgagagtataatattaagggt |
560 |
Q |
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|||| ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
42307385 |
tcgaattaatgcatttgatttaaaatttgcactgaatacattgacttatacgaactctttttaacttatattttgggatcgagagtataataataagggt |
42307484 |
T |
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| Q |
561 |
atatatgagcaattatc |
577 |
Q |
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| T |
42307485 |
atatatgagcaattatc |
42307501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 16935854 - 16935946
Alignment:
| Q |
21 |
tcataatccatgaggggattggaagctacctggccccaacccatcccctccaaaacgnnnnnnnntcatgcttatatcctgaatttggcaagaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |
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| T |
16935854 |
tcataatccatgaggggattggaagctacctggccccaacccatcccctccaagaag---aaaaatcatgcttatatcctgaatttggcaagaaaa |
16935946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 509
Target Start/End: Original strand, 12276854 - 12276899
Alignment:
| Q |
464 |
agttaatgcatttgattcaaaatttgcactaaatacatcgacttat |
509 |
Q |
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| T |
12276854 |
agttaatgtatttgattcaaaatttatactaaatacatcaacttat |
12276899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 540
Target Start/End: Complemental strand, 20185387 - 20185313
Alignment:
| Q |
466 |
ttaatgcatttgattcaaaatttgcactaaatacatcgacttatacgaactctttttaacttatattttgggagt |
540 |
Q |
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|||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |||| | ||| ||||||||||| |
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| T |
20185387 |
ttaatgtatttggttcaaaatttgtacaaaatacatcgacttatattaactcatttttatttacattttgggagt |
20185313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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