View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21657_low_9 (Length: 554)
Name: NF21657_low_9
Description: NF21657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21657_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 131 - 542
Target Start/End: Original strand, 34384429 - 34384848
Alignment:
| Q |
131 |
actggtcaagagtatttctatgctccaagaaatcattattcctgcacatagtactagcttcaattgagcctctagtgggtggtggaattggttcccggat |
230 |
Q |
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| T |
34384429 |
actggtcaagagtatttctatgctccaagaaatcattattcctgcacatagtactagcttcaattgagcctctagtgggcggtggaattggtccccggat |
34384528 |
T |
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| Q |
231 |
tagtcgttcctaggactgaatatcgagtttnnnnnnnnnnttaaacgaattcatttgatgagtactttggctgnnnnnnnnnnnnnnnaataaattgann |
330 |
Q |
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| T |
34384529 |
tagtcgttcctaggactgaatatcgagtttaaaaaaaaaattaaacgaattcatttgatgagtactttggctgttttttttttttt--aataaattgatt |
34384626 |
T |
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| Q |
331 |
nnnnnaatgttcttccttagttttataaaagaaggagttgagggggtatattgcttcaaatattcttcttttcactttgatatataacttggttgatgga |
430 |
Q |
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| T |
34384627 |
tttttaatgttcttccttagttttataaaagaaggagttgagggggtatattgcttcaaatattcttcttttcactttgatatataacttggttgatgga |
34384726 |
T |
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| Q |
431 |
ttaattttgtctcatgttgtatattactctatgaaattatttttaaatctttgaataggtttggattggat----------tgggttataagacagtata |
520 |
Q |
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| T |
34384727 |
ttaattttgtctcatgttgtatattactctatgaaattatttttaaatctttgaataggtttggattggattggattggtatgggttataagacagtata |
34384826 |
T |
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| Q |
521 |
ggatgaaatcatttgagatatt |
542 |
Q |
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| T |
34384827 |
ggatgaaatcatttgagatatt |
34384848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34384299 - 34384364
Alignment:
| Q |
1 |
ttccttttctgtgttgctttcagaattcctgcacaggtaattcttctccttctctttgtaagaaac |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34384299 |
ttccttttctgtgttgctttcagaattcctgcacaggtaattcttctccttctctttgtaagaaac |
34384364 |
T |
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