View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21658_high_14 (Length: 265)
Name: NF21658_high_14
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 13754183 - 13754418
Alignment:
| Q |
19 |
tttactgcaatcaaatctcactatcaaattgattcttgcacaaggtgaggtgtacaaacacaacatcgtttaacattgtaggtcaacatactaatgtttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13754183 |
tttactgcaatcaaatctcactatcaaattgattcttgcacaagatgaggtgtacaaacacaacatcgtttaacattgtaggtcaacatactaatgtttg |
13754282 |
T |
|
| Q |
119 |
gacttacgaaaagaagggactcatttgatagacgtgaaacaaattgaagggtgatttggctattttgaaaaaactaagagacaaagttaactgatgatta |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13754283 |
gacttacggaaagaagggactcatttgatagacgtgaaacaaattgaagggtgatttggctattttgaaaaaactaagagacgaagttaactgatgatta |
13754382 |
T |
|
| Q |
219 |
cataccatgactcaccacctcatggattaaattcat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13754383 |
cataccatgactcaccacctcatggattaaattcat |
13754418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University