View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21658_high_16 (Length: 250)
Name: NF21658_high_16
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_high_16 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 30688549 - 30688783
Alignment:
| Q |
14 |
atatagcaagagaagaaagcaagtgtgtgatcaattgtgtgagagagtttcttgtaatgatagtgttttatcatttcttgtaactcttaagtgagagtac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30688549 |
atatagcaagagaagaaagcaagtgtgtgatcaattgtgtgaga--gtttcttgtaatgatagtgttttatcatttcttgtaactcttaagtgagagtac |
30688646 |
T |
|
| Q |
114 |
taaaatttgtagagtgatgcacaattcaggttagttgctcaagatatgcaagaagtgtctaagcacataaattttgtgttctcttactattttcttggtg |
213 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30688647 |
taaaatttgtagagtgatacgcaattcaggttagttgctcaagatatgcaagaagtgtctaagcacataaattttgtgttctcttactattttcttggtg |
30688746 |
T |
|
| Q |
214 |
tatgtattcttatctaagatctttggtatctgcagat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30688747 |
tatgtattcttatctaagatctttggtatctgcagat |
30688783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 30697751 - 30697987
Alignment:
| Q |
14 |
atatagcaagagaagaaagcaagtgtgtgatcaattgtgtgagagagtttcttgtaa-tgatagtgttt----tatcatttcttgtaactcttaag---- |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30697751 |
atatagcaagagaagaaagcaagtgtgtgatcaattgtgtgagag--tttcttgcaaatgatagtgtttaatttatcatttcttgtaactcttaagtaag |
30697848 |
T |
|
| Q |
105 |
tgagagtactaaaatttgtagagtgatgcacaattcaggttagttgctcaagatatgcaagaagtgtctaagcacataaa-ttttgtgttctcttactat |
203 |
Q |
| |
|
|||||||||| |||||||||||| ||| | |||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
30697849 |
tgagagtacttaaatttgtagagcgatacgcaattcagtttagttgctcaagatatacaagaagtgtctaaccacataaatttttgtgttctcttactgt |
30697948 |
T |
|
| Q |
204 |
tttcttggtgtatgtattcttatctaagatctttggtat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30697949 |
tttcttggtgtatgtattcttatctaagatctttggtat |
30697987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University