View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21658_high_19 (Length: 238)
Name: NF21658_high_19
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_high_19 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 38644019 - 38643803
Alignment:
| Q |
1 |
actgtaaccgtagccatattttgcatttgggtcattgtttcttgtgtcaaataaggaacttgttggggtttagaaattggtgtttctttttcaaatagaa |
100 |
Q |
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| T |
38644019 |
actgtaaccgtagccatattttgcatttgggtcattgtttcttgtgtcaaataaggaacttgttggggtttagaaattggtgtttctttttcaaatagta |
38643920 |
T |
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| Q |
101 |
cctctttcacagattcctcttcaacaatacgtggtggtgattttgactgagaagaagaagattgatacaatagtgttcgttctaatatgatgggagagtg |
200 |
Q |
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| T |
38643919 |
cctctttcacagattcctcttcaacaatacgtggtggtgattttgactgagaagaagaagattgatacaatagtgttcgttctaatatgatgggagagtg |
38643820 |
T |
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| Q |
201 |
gaacagaagttctgggt |
217 |
Q |
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| T |
38643819 |
gaacagaagttatgggt |
38643803 |
T |
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Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 38235404 - 38235272
Alignment:
| Q |
14 |
ccatattttgcatttgggtcattgtttcttgtgtcaaataaggaacttgttggggtttagaaattggtgtttctttttcaaatagaacctctttcacaga |
113 |
Q |
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| T |
38235404 |
ccatattttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacaga |
38235305 |
T |
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| Q |
114 |
ttcctcttcaacaatacgtggtggtgattttga |
146 |
Q |
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| T |
38235304 |
ttcctcttcaacaatatgtggtggtgattttga |
38235272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 16831 - 16903
Alignment:
| Q |
55 |
ggaacttgttggggtttagaaattggtgtttctttttcaaatagaacctctttcacagattcctcttcaacaa |
127 |
Q |
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| T |
16831 |
ggaacttgttggggtttgaaaattggtgtttctatgtcaaatagaacttctttcacagattcctctgcaacaa |
16903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 37609699 - 37609646
Alignment:
| Q |
19 |
ttttgcatttgggtcattgtttcttgtgtcaaataaggaacttgttggggttta |
72 |
Q |
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| T |
37609699 |
ttttgcatatgggtcattatttcttatgtcaaatttggaacttgttgaggttta |
37609646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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