View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21658_high_20 (Length: 237)
Name: NF21658_high_20
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16558942 - 16559162
Alignment:
| Q |
1 |
taagcagaaaatcatgaagctaagaaaggagaacgaggtccttaaaagaaagttttctcatattgaagagggcaagtaatgatgaaaaactcaagattgg |
100 |
Q |
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| T |
16558942 |
taagcagaaaatcatgaagctaagaaaggagaacgaggtccttaaaagaaagttctctcatattgaagagggcaagtaatgatgaaaaactcaagattgg |
16559041 |
T |
|
| Q |
101 |
caactttgagttcataaggataaggcatatccgatattaacagtgatatacatactgtctaagcattgcgatttgcaaccatgcctttatttttaacgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
16559042 |
caactttgagttcataaggataaggcatatccgatattatcagtgatatacatactgtctaagcattgcaatttgcaaccatgcctttatttttaaagat |
16559141 |
T |
|
| Q |
201 |
gggaaaaaagggtaagcatat |
221 |
Q |
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||||||||||||||| |||| |
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| T |
16559142 |
aggaaaaaagggtaagtatat |
16559162 |
T |
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