View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21658_high_22 (Length: 234)
Name: NF21658_high_22
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 6662385 - 6662496
Alignment:
| Q |
104 |
tgccaacaacctcattattgcccaaagcaaatacagaatcaattgcagtaatcatgacctgaatctgtacaaaaaagcatacaacttttagattctgcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6662385 |
tgccaacaacctcattattgcccaaagcaaatacagaatcaattacagtaatcatgacctgaatctgtacaaaaaagcatacaacttttagattctgcct |
6662484 |
T |
|
| Q |
204 |
aaattttgactt |
215 |
Q |
| |
|
||||||| |||| |
|
|
| T |
6662485 |
aaattttcactt |
6662496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 6662614 - 6662526
Alignment:
| Q |
19 |
tgctttcttttctgaagaacgaacatttatttactatggagcatatgaaaaaggtgatttttaatgctaacttgtttaggtgtcatgcc |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6662614 |
tgctttcttttctgaagaaccaacatttatttactatggagcatatgaaaaaggtgatttttaatgctaacttgtttaggtgtcatgcc |
6662526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 49314414 - 49314473
Alignment:
| Q |
150 |
agtaatcatgacctgaatctgtacaaaaaagcatacaacttttagattctgcctaaattt |
209 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| | || | ||||||||| ||||||||| |
|
|
| T |
49314414 |
agtaatcatggcatgaatctgtacaaaaaagcaaaaaaatattagattctacctaaattt |
49314473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University