View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21658_high_23 (Length: 231)
Name: NF21658_high_23
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 43416324 - 43416118
Alignment:
| Q |
9 |
tccaagaatatgttagagtatatttcgtgagcgagta---agaagtgttatatcgttggtgtgacaagtgtgagttagtgaatgttgagcaataactact |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
43416324 |
tccaagcaaatgttagagtatatttcgtgagcgagtagtaagaagtgttatattgttggtgtgataagtgcgagttagtgaatgttgagcaataactatt |
43416225 |
T |
|
| Q |
106 |
ttaatgttgtgagtcaacatagtgaaagtgtattttgataaattttcatttgaagaggagaatatagagatgggtggatagactcactcataattcatcc |
205 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43416224 |
ttgatgttgtgagtcaacatcgtgaaagtgtattttgataaattttcatttgaaggggagcatatcgagatgggtggatagactcactcataattcatcc |
43416125 |
T |
|
| Q |
206 |
ccctagg |
212 |
Q |
| |
|
||||||| |
|
|
| T |
43416124 |
ccctagg |
43416118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University