View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21658_high_3 (Length: 626)
Name: NF21658_high_3
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 331 - 607
Target Start/End: Original strand, 12818228 - 12818504
Alignment:
| Q |
331 |
cgcttacaatcatcaatggcacaactttagaatcagaatcataaacttcatcctgtaaggcttcttcattaaaatcataaatccagttctcatcatcagg |
430 |
Q |
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| T |
12818228 |
cgcttacaatcatcaatggcacagctttagaatcagaatcataaacttcatcctgtaaggcttcttcattaaaatcataaatccagttctcatcatcagg |
12818327 |
T |
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| Q |
431 |
aggtaaccaagcttggggcggcgcagccaaaatccgagtagaattaatcggaaccggagcatacacagcaagatccatcggccccggccaaatatctgac |
530 |
Q |
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| T |
12818328 |
aggtaaccaagcttggggcggcgcagccaaaatccgagtagaattaatcggaaccggagcatacacagcaagatccatcggccccggccaaatatctgac |
12818427 |
T |
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| Q |
531 |
aaatcaccaatatctacctgcggaacatcaccggtggacattacggaaaaaatctcagcgttggttaaccccgcatc |
607 |
Q |
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| T |
12818428 |
aaatcaccaatatctacctgcggaacatcaccggtggacattacggaaaaaatatcagcgttggttaaccccgcatc |
12818504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 12754953 - 12755216
Alignment:
| Q |
13 |
cagatcaaatgtgtgtttggtgtttaacatgtgtcggtgatcaacaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgt |
112 |
Q |
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| T |
12754953 |
cagatcaaaagtgtgtttggtgtctaacatgcgttggtgaacaacaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgt |
12755052 |
T |
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| Q |
113 |
gt---gtatcggacatgtgtcattcgacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctg |
209 |
Q |
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| T |
12755053 |
gtctggtatcggacatgtgtcattcaacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaagtatctg |
12755152 |
T |
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| Q |
210 |
acacatgtaagagtctattaatcagtgtctacatgtcagtgtcgtgttagtgcttcgtagcatact |
275 |
Q |
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| T |
12755153 |
acacatgta--agtctattaatcagtgcctacatgtcagtgtcgtgttagtgcttcgtagcatact |
12755216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 12817914 - 12818152
Alignment:
| Q |
13 |
cagatcaaatgtgtgtttggtgtttaacatgtgtcggtgatcaacaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgt |
112 |
Q |
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| T |
12817914 |
cagatcaaaagtgtgtttggtgtctaacatgcgttggtgaacaacaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgt |
12818013 |
T |
|
| Q |
113 |
gt---gtatcggacatgtgtcattcgacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctg |
209 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12818014 |
gtctggtatcggacatgtgtcattcaacaacattaacacaatactaacacaaaacttatgtagcatacacaattcagatcaattgtatgtcaagtatctg |
12818113 |
T |
|
| Q |
210 |
acacatgtaagagtctattaatcagtgtctacatgtcagtg |
250 |
Q |
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| T |
12818114 |
acacatgta--agtctattaatcagtgcctacatgtcagtg |
12818152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 12755280 - 12755392
Alignment:
| Q |
331 |
cgcttacaatcatcaatggcacaactttagaatcagaatcataaacttcatcctgtaaggcttcttcattaaaatcataaatccagttctcatcatcagg |
430 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12755280 |
cgcttacaatcatcaatggcacagctttagaatcagaatcataaacttcatcctgtaaggctt-ttcattaaaatcataaatccagttctcatcatcagg |
12755378 |
T |
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| Q |
431 |
aggtaaccaagctt |
444 |
Q |
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|||||||||||||| |
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| T |
12755379 |
aggtaaccaagctt |
12755392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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