View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21658_low_1 (Length: 1550)

Name: NF21658_low_1
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21658_low_1
NF21658_low_1
[»] scaffold0470 (5 HSPs)
scaffold0470 (1033-1404)||(2093-2464)
scaffold0470 (401-648)||(5634-5876)
scaffold0470 (18-355)||(5313-5637)
scaffold0470 (1493-1550)||(1947-2004)
scaffold0470 (994-1039)||(1738-1783)
[»] chr8 (25 HSPs)
chr8 (1033-1404)||(6612805-6613176)
chr8 (485-857)||(6580461-6580837)
chr8 (401-648)||(6616348-6616590)
chr8 (18-355)||(6616027-6616351)
chr8 (460-644)||(6757681-6757861)
chr8 (460-644)||(6659686-6659866)
chr8 (460-644)||(6740088-6740268)
chr8 (1225-1314)||(6660429-6660518)
chr8 (1225-1314)||(6740831-6740920)
chr8 (847-954)||(6581014-6581121)
chr8 (1225-1314)||(6758338-6758427)
chr8 (1225-1314)||(6582170-6582263)
chr8 (1493-1550)||(6612659-6612716)
chr8 (994-1039)||(6612450-6612495)
chr8 (1156-1214)||(6582371-6582429)
chr8 (1156-1214)||(6660629-6660687)
chr8 (1156-1214)||(6741031-6741089)
chr8 (1033-1085)||(6582448-6582500)
chr8 (1033-1085)||(6758623-6758675)
chr8 (1156-1214)||(6758546-6758604)
chr8 (668-722)||(35793178-35793232)
chr8 (664-703)||(5945357-5945396)
chr8 (1034-1077)||(6601733-6601776)
chr8 (1034-1077)||(6677186-6677229)
chr8 (668-722)||(22786554-22786608)
[»] chr4 (2 HSPs)
chr4 (668-718)||(9116266-9116316)
chr4 (664-718)||(40202280-40202334)
[»] chr3 (5 HSPs)
chr3 (668-718)||(39994200-39994250)
chr3 (668-718)||(4037150-4037200)
chr3 (668-718)||(10688617-10688667)
chr3 (668-718)||(11233515-11233565)
chr3 (668-718)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (667-718)||(36436058-36436109)
chr7 (668-718)||(16876748-16876798)
chr7 (668-718)||(18867959-18868009)
chr7 (668-718)||(23185934-23185984)
chr7 (668-718)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (668-718)||(6139327-6139377)
chr6 (668-718)||(7506641-7506691)
chr6 (668-718)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (668-718)||(3496810-3496860)
chr2 (668-718)||(11226155-11226205)
chr2 (668-718)||(15141889-15141939)
chr2 (668-718)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (668-722)||(26478571-26478625)
chr1 (668-718)||(27032331-27032381)
chr1 (668-718)||(27907712-27907762)
chr1 (668-718)||(51748561-51748611)
chr1 (669-718)||(24671166-24671215)


Alignment Details
Target: scaffold0470 (Bit Score: 299; Significance: 1e-167; HSPs: 5)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 1033 - 1404
Target Start/End: Complemental strand, 2464 - 2093
Alignment:
Q  1033 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgannnnnnnnaatttaccttacatattatgcattatgtattgcacatat 1132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||   ||||||||  ||||||    
T  2464 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgattttttttaatttaccctacatattatgtcatatgtattatacatat 2365  T
Q  1133 caacttagctaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagnnnnnnnctaataaat 1232  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  2364 caacttagttaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagtttttttctaataaat 2265  T
Q  1233 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 1332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2264 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 2165  T
Q  1333 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 1404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2164 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 2093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 192; E-Value: 1e-103
Query Start/End: Original strand, 401 - 648
Target Start/End: Original strand, 5634 - 5876
Alignment:
Q  401 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgttacgttaactttatatctt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||    
T  5634 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgtta-----actttatctctt 5728  T
Q  501 agtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttcattcaagcaatctcag 600  Q
    ||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  5729 agtaagtgaaatctcctttcaacatgcttgctttttccatggttaattgataatttgctaaatgaattgttaacaagaagtttcattcaagcaatctcag 5828  T
Q  601 taatcttcaattcttcaagcaacatttcaatccttagtgcttgacaag 648  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  5829 taatattcaattcttcaagcaacatttcaatccatagtgcttgacaag 5876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #3
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 5313 - 5637
Alignment:
Q  18 aaaataattgtgttatcattctataataaataattgttgttttcaatnnnnnnn--ttccttgtctttaattatagcaccattataatttctattgaagg 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  5313 aaaataattgtgttatcattttataataaataattgttgttttcaataaataaaaattccttgtctttaattatagcaccattataatttctattgaagg 5412  T
Q  116 gaatgcatattactgatgaatggactaatgctgatatacatagtcatttcaatctctaactaccataataacttgttccacaagtcatgaaactaccata 215  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||            |||||||||||| |||||||||         |    
T  5413 gaatgcacattatcgatgaatggactaatgctgatatacatagtcatttcaatctc------------taacttgttccataagtcatga---------a 5491  T
Q  216 actaccaatactaactatactaatcgactaactttc---ataacaaacaagaaagttacttaacaacatagataactggt----tcaacaagtaatcatt 308  Q
    |||||||||||||||| |||||||||||||||||||   ||||||||| |||| |||| |||||||||||||||||| ||    | |||||||||||| |    
T  5492 actaccaatactaactgtactaatcgactaactttcataataacaaactagaatgttagttaacaacatagataacttgtttaattaacaagtaatcagt 5591  T
Q  309 atctaatcatgaattacaacacttcacacctcctaattcatgattgc 355  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  5592 atctaatcatgaattacaaca-ttcagacctcctaattcatgattgc 5637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #4
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1493 - 1550
Target Start/End: Complemental strand, 2004 - 1947
Alignment:
Q  1493 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 1550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2004 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 1947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #5
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 994 - 1039
Target Start/End: Original strand, 1738 - 1783
Alignment:
Q  994 atcacatatctcagaatggagatatatgctctagctttaataggat 1039  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1738 atcacatatctcagaatggagatatatgctctagctttaataggat 1783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 299; Significance: 1e-167; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 1033 - 1404
Target Start/End: Complemental strand, 6613176 - 6612805
Alignment:
Q  1033 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgannnnnnnnaatttaccttacatattatgcattatgtattgcacatat 1132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||   ||||||||  ||||||    
T  6613176 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtgattttttttaatttaccctacatattatgtcatatgtattatacatat 6613077  T
Q  1133 caacttagctaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagnnnnnnnctaataaat 1232  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  6613076 caacttagttaaacttaggaggataaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaaagtttttttctaataaat 6612977  T
Q  1233 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 1332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612976 tgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaaggtgtatttttatgttttc 6612877  T
Q  1333 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 1404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612876 ctttttccatatacaagtcttcaaagttgtatttgtctgtatgtgatgccatctttctgtcttcgaatagtg 6612805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 485 - 857
Target Start/End: Original strand, 6580461 - 6580837
Alignment:
Q  485 gttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttc 584  Q
    ||||||||||| |||||||||| |||||||| | ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | | |||||||||    
T  6580461 gttaactttatctcttagtaagcgaaatctcctttcaacatgcttgctttttccatggttaattgataattttctaaatcaattgttagcgagaagtttc 6580560  T
Q  585 attcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttgacaagcaacaaatgtatcatttcatatctctcttttaacta 684  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6580561 attcaagcaatctcagtaatcttcaattcttcaagcaacattttaatccatagtgcttgacaagcaacaaatgtatcatttcatatttctcttttaacta 6580660  T
Q  685 ctcattctctctcatttaattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtcgatgataaccaaaatgagattcttt 784  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6580661 ctcattctctctcatataattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtagatgatagccaaaatgagattcttt 6580760  T
Q  785 ttat--tctatttttctcacaacatggtgttaatgtttttgtcctttgtgg--tctgtcactcttgctttctaggtt 857  Q
    ||||  |||||||||||||||||||||||| |||| ||||||||||  |||  ||||||||||||| ||| ||||||    
T  6580761 ttattctctatttttctcacaacatggtgtcaatgcttttgtccttcctggtctctgtcactcttgttttttaggtt 6580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-103
Query Start/End: Original strand, 401 - 648
Target Start/End: Original strand, 6616348 - 6616590
Alignment:
Q  401 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgttacgttaactttatatctt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| ||||    
T  6616348 ttgccttcttcaagggttttatttgaatgtttgtcaattgcagttcagttttgcaataataaagttccaaactatctttgtta-----actttatctctt 6616442  T
Q  501 agtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgctaaatcaattgtcaacaagaagtttcattcaagcaatctcag 600  Q
    ||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  6616443 agtaagtgaaatctcctttcaacatgcttgctttttccatggttaattgataatttgctaaatgaattgttaacaagaagtttcattcaagcaatctcag 6616542  T
Q  601 taatcttcaattcttcaagcaacatttcaatccttagtgcttgacaag 648  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  6616543 taatattcaattcttcaagcaacatttcaatccatagtgcttgacaag 6616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 6616027 - 6616351
Alignment:
Q  18 aaaataattgtgttatcattctataataaataattgttgttttcaatnnnnnnn--ttccttgtctttaattatagcaccattataatttctattgaagg 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  6616027 aaaataattgtgttatcattttataataaataattgttgttttcaataaataaaaattccttgtctttaattatagcaccattataatttctattgaagg 6616126  T
Q  116 gaatgcatattactgatgaatggactaatgctgatatacatagtcatttcaatctctaactaccataataacttgttccacaagtcatgaaactaccata 215  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||            |||||||||||| |||||||||         |    
T  6616127 gaatgcacattatcgatgaatggactaatgctgatatacatagtcatttcaatctc------------taacttgttccataagtcatga---------a 6616205  T
Q  216 actaccaatactaactatactaatcgactaactttc---ataacaaacaagaaagttacttaacaacatagataactggt----tcaacaagtaatcatt 308  Q
    |||||||||||||||| |||||||||||||||||||   ||||||||| |||| |||| |||||||||||||||||| ||    | |||||||||||| |    
T  6616206 actaccaatactaactgtactaatcgactaactttcataataacaaactagaatgttagttaacaacatagataacttgtttaattaacaagtaatcagt 6616305  T
Q  309 atctaatcatgaattacaacacttcacacctcctaattcatgattgc 355  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  6616306 atctaatcatgaattacaaca-ttcagacctcctaattcatgattgc 6616351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 4e-57
Query Start/End: Original strand, 460 - 644
Target Start/End: Original strand, 6757681 - 6757861
Alignment:
Q  460 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattgataatttgct 559  Q
    |||||||| |||||||||||||||     |||| || |||||| |||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||    
T  6757681 taaagttcgaaactatctttgtta-----acttgatctcttaggaagtgaaatctcctttcaacatgcttgcttcttccatggttaattgctaatttgct 6757775  T
Q  560 aaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagc-aacatttcaatccttagtgcttga 644  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||    
T  6757776 aaatcaattgtcaaaaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaaacatttcaatccatagtgcttga 6757861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 460 - 644
Target Start/End: Original strand, 6659686 - 6659866
Alignment:
Q  460 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattga-taatttgc 558  Q
    |||||||| |||||||||||||||     |||| || || ||| |||| ||||||  | ||||||||||| |||||||||||||||||||| ||||||||    
T  6659686 taaagttcgaaactatctttgtta-----acttgatctcgtaggaagtcaaatctactttcaacatgcttgcttcttccatggttaattgagtaatttgc 6659780  T
Q  559 taaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttga 644  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  6659781 taaatcaattgtcaacaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaacatttcaatccatagtacttga 6659866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 460 - 644
Target Start/End: Original strand, 6740088 - 6740268
Alignment:
Q  460 taaagttccaaactatctttgttacgttaactttatatcttagtaagtgaaatctcatctcaacatgcttacttcttccatggttaattga-taatttgc 558  Q
    |||||||| |||||||||||||||     |||| || || ||| |||| ||||||  | ||||||||||| |||||||||||||||||||| ||||||||    
T  6740088 taaagttcgaaactatctttgtta-----acttgatctcgtaggaagtcaaatctactttcaacatgcttgcttcttccatggttaattgagtaatttgc 6740182  T
Q  559 taaatcaattgtcaacaagaagtttcattcaagcaatctcagtaatcttcaattcttcaagcaacatttcaatccttagtgcttga 644  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  6740183 taaatcaattgtcaacaagaagtttcattcaagcaatctcaataatcttcaattcttcaagcaacatttcaatccatagtacttga 6740268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 1225 - 1314
Target Start/End: Complemental strand, 6660518 - 6660429
Alignment:
Q  1225 taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag 1314  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||    
T  6660518 taataaattgatttaaaaagtataatagaaaagagataaaactagtattaactaaaatgacatttgtgttgaagtcaattgcatggaaag 6660429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 1225 - 1314
Target Start/End: Complemental strand, 6740920 - 6740831
Alignment:
Q  1225 taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag 1314  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||    
T  6740920 taataaattgatttaaaaagtataatagaaaagagataaaactagtattaactaaaatgacatttgtgttgaagtcaattgcatggaaag 6740831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 847 - 954
Target Start/End: Original strand, 6581014 - 6581121
Alignment:
Q  847 ctttctaggtttaagtgaaagagttgaagttgtggtcccttgtgtctctttccttaaaacatctacgatgtcggttcttttatacgtctactatatatgc 946  Q
    |||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||| |||||||||    
T  6581014 ctttttaggtttacttgaaagagttgaagttgtggtcccttgtatctctttccttaaaaaatcttcgatgtgggttcttttatacatctattatatatgc 6581113  T
Q  947 ctcatatt 954  Q
     |||||||    
T  6581114 ttcatatt 6581121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1225 - 1314
Target Start/End: Complemental strand, 6758427 - 6758338
Alignment:
Q  1225 taataaattgatttaaaatgtataatagaaaagagataaaattattattaactaaaatgacatttgtgttgaagttaattgcatggaaag 1314  Q
    |||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||||    
T  6758427 taataaattgatttaaaaagtataatagaaaagagataaaactggtattaactaaaatgacttttgtgttgaagtcaattgcatggaaag 6758338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 1225 - 1314
Target Start/End: Complemental strand, 6582263 - 6582170
Alignment:
Q  1225 taataaattgatttaaaatgtataatagaaaagagataaaatta----ttattaactaaaatgacatttgtgttgaagttaattgcatggaaag 1314  Q
    |||||||||||||||||| |||||||||||||||||||||| ||     |||||||||||||||||||||||||||||| ||||||||||||||    
T  6582263 taataaattgatttaaaaagtataatagaaaagagataaaactagtatatattaactaaaatgacatttgtgttgaagtcaattgcatggaaag 6582170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1493 - 1550
Target Start/End: Complemental strand, 6612716 - 6612659
Alignment:
Q  1493 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 1550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612716 gacgcgtttgattcacaacatagtaaataataaatagaatagtacgagacaatacata 6612659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 994 - 1039
Target Start/End: Original strand, 6612450 - 6612495
Alignment:
Q  994 atcacatatctcagaatggagatatatgctctagctttaataggat 1039  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6612450 atcacatatctcagaatggagatatatgctctagctttaataggat 6612495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1156 - 1214
Target Start/End: Complemental strand, 6582429 - 6582371
Alignment:
Q  1156 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 1214  Q
    |||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||    
T  6582429 taaatttaaatacacatttaattttacgggatagtgttttaggttttgtggtagtgaaa 6582371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1156 - 1214
Target Start/End: Complemental strand, 6660687 - 6660629
Alignment:
Q  1156 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 1214  Q
    |||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  6660687 taaatttaaatacatacttaattatacgggatagtgttttaggttttgtggtagtgaaa 6660629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1156 - 1214
Target Start/End: Complemental strand, 6741089 - 6741031
Alignment:
Q  1156 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 1214  Q
    |||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  6741089 taaatttaaatacatacttaattatacgggatagtgttttaggttttgtggtagtgaaa 6741031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1033 - 1085
Target Start/End: Complemental strand, 6582500 - 6582448
Alignment:
Q  1033 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtga 1085  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6582500 atagcattgaagtgagtggtttggaatcaaaatggttttgacaaaatccgtga 6582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1033 - 1085
Target Start/End: Complemental strand, 6758675 - 6758623
Alignment:
Q  1033 ataggattgaagtgagtggtttggaatcaaaatggttttgataaagtccgtga 1085  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6758675 atagcattgaagtgagtggtttggaatcaaaatggttttgacaaaatccgtga 6758623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1156 - 1214
Target Start/End: Complemental strand, 6758604 - 6758546
Alignment:
Q  1156 taaatttaaatacacacttaattgtacgtgatagtgttttatgttttgtggtagtgaaa 1214  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||  ||||||||||    
T  6758604 taaatttaaatacacacttaattatacgggatagtgttttaggttttacggtagtgaaa 6758546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 35793178 - 35793232
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 722  Q
    ||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||    
T  35793178 tatctctctcttaactactcattatctctcatttaaataatttattttaattatt 35793232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 664 - 703
Target Start/End: Complemental strand, 5945396 - 5945357
Alignment:
Q  664 ttcatatctctcttttaactactcattctctctcatttaa 703  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  5945396 ttcatatctctcttttaactaatcattctctctcatttaa 5945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1034 - 1077
Target Start/End: Complemental strand, 6601776 - 6601733
Alignment:
Q  1034 taggattgaagtgagtggtttggaatcaaaatggttttgataaa 1077  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  6601776 taggattgaagtgattggtttggaatcaaaatggttgtgataaa 6601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1034 - 1077
Target Start/End: Complemental strand, 6677229 - 6677186
Alignment:
Q  1034 taggattgaagtgagtggtttggaatcaaaatggttttgataaa 1077  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  6677229 taggattgaagtgattggtttggaatcaaaatggttgtgataaa 6677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 22786554 - 22786608
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 722  Q
    ||||||||||||||| | ||||||||| |||||||| | ||||| ||||||||||    
T  22786554 tatctctcttttaaccattcattctctttcatttaaataatttactttaattatt 22786608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 9116316 - 9116266
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  9116316 tatctcttttttaacaactcattctctctcatttaaataatttattttaat 9116266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 664 - 718
Target Start/End: Complemental strand, 40202334 - 40202280
Alignment:
Q  664 ttcatatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||| ||||||||||| ||||||||||| |||| ||| | ||||||||||||    
T  40202334 ttcatatgtctcttttaaccactcattctctttcatctaaataatttattttaat 40202280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 39994200 - 39994250
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||||||||| |||||||||||||||| ||| | ||||||||||||    
T  39994200 tatctctcttttaacaactcattctctctcatctaaataatttattttaat 39994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 4037150 - 4037200
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  4037150 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 4037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 10688617 - 10688667
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  10688617 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 10688667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 11233515 - 11233565
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11233515 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11233565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 49279498 - 49279548
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  49279498 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 49279548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 667 - 718
Target Start/End: Complemental strand, 36436109 - 36436058
Alignment:
Q  667 atatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||||| |||||| ||||||||||||||  || ||||||||||||||    
T  36436109 atatctctcttctaactaatcattctctctcatcaaaatgatttattttaat 36436058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 16876798 - 16876748
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  16876798 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 16876748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 18868009 - 18867959
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  18868009 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 18867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 23185984 - 23185934
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  23185984 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 23185934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 46425399 - 46425349
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  46425399 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 46425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 6139327 - 6139377
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||||||||| | |||||||||||||| ||| | ||||||||||||    
T  6139327 tatctctcttttaaccattcattctctctcatctaaataatttattttaat 6139377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 7506641 - 7506691
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 7506691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 9928270 - 9928320
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  9928270 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 9928320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 3496860 - 3496810
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  3496860 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 3496810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 11226155 - 11226205
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11226155 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11226205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 15141889 - 15141939
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||||||||| ||| |||||||||||| ||| | ||||||||||||    
T  15141889 tatctctcttttaacaacttattctctctcatctaaataatttattttaat 15141939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 19037128 - 19037078
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 19037078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 26478571 - 26478625
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 722  Q
    ||||| ||||||||| | ||||| ||| |||||||| ||||||||||||||||||    
T  26478571 tatctttcttttaacaattcattatctttcatttaaatgatttattttaattatt 26478625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Complemental strand, 27032381 - 27032331
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27032381 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27032331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 27907712 - 27907762
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27907712 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27907762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 51748561 - 51748611
Alignment:
Q  668 tatctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    ||||| ||||||||| |||||||||||||||| ||| | ||||||||||||    
T  51748561 tatctttcttttaacaactcattctctctcatctaaataatttattttaat 51748611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 669 - 718
Target Start/End: Original strand, 24671166 - 24671215
Alignment:
Q  669 atctctcttttaactactcattctctctcatttaattgatttattttaat 718  Q
    |||| ||| ||||| |||||||||||||||||||| | ||||||||||||    
T  24671166 atctttctcttaaccactcattctctctcatttaaataatttattttaat 24671215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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