View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21658_low_11 (Length: 324)
Name: NF21658_low_11
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_low_11 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 9629053 - 9628750
Alignment:
| Q |
18 |
actcttaccttaggggataaaaggaaacaacagagatgagcacacatctcgatctcagcaagcctctcttaatgggcatagattcctctacacctttctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9629053 |
actcttaccttaggggataaaaggaaacaacagagatgagcacacatctcgatctcaacaagcctctcttaatgggcttagattcctctacacctttctc |
9628954 |
T |
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| Q |
118 |
gctgcaacttaggcgagagaaagaccagccaaacgggttccggtcatgagttagcaatcaaaaccgactgcctagatactgagcagattttgtccatgat |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9628953 |
gctacaacttaggcgagagaaagaccagccaaacgggttccggtcatgagttagcaatcaaaaccgactgcctagatatagagcagattttgtccatgat |
9628854 |
T |
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| Q |
218 |
tattaacgtaacccgataagctccaggtttagtggtagtattattattaagaagtacatatacattagaaggataaatagttaaaaatagtaccaattta |
317 |
Q |
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|||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
9628853 |
tattaaggtaactagataagctccaggtttagttgtagtatt---attaagaagtacatatacgttagaaggataaatagttaaaattagtaccaattta |
9628757 |
T |
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| Q |
318 |
ttttgtt |
324 |
Q |
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||||||| |
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| T |
9628756 |
ttttgtt |
9628750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0212 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 34 - 256
Target Start/End: Original strand, 11856 - 12078
Alignment:
| Q |
34 |
ataaaaggaaacaacagagatgagcacacatctcgatctcagcaagcctctcttaatgggcatagattcctctacacctttctcgctgcaacttaggcga |
133 |
Q |
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| T |
11856 |
ataaaaggaaacaacagagatgagcacacatctcgatctcagaaagcctctcttaatgggcttagattcctctacacctttctcgcttcaacttaggcga |
11955 |
T |
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| Q |
134 |
gagaaagaccagccaaacgggttccggtcatgagttagcaatcaaaaccgactgcctagatactgagcagattttgtccatgattattaacgtaacccga |
233 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||| || |
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| T |
11956 |
gagaaagaccagccaaacgggttccggtcgtgagttagcaatcaaaaccgactgcctggatacagaccagattttgtccatgattattaaggtaaccaga |
12055 |
T |
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| Q |
234 |
taagctccaggtttagtggtagt |
256 |
Q |
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| T |
12056 |
taagctccaggtttagttgtagt |
12078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 28039349 - 28039254
Alignment:
| Q |
56 |
agcacacatctcgatctcagcaagcctctcttaatgggcatagattcctctacacctttctcgctgcaacttaggcgagagaaagaccagccaaac |
151 |
Q |
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||||||||||||||||| | | |||||| |||| |||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||| |||||| |
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| T |
28039349 |
agcacacatctcgatcttataatgcctcttttaacgggcttagattcctctacacctttcttgcttcaacttaggcgcgagaaataccaaccaaac |
28039254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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