View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21658_low_14 (Length: 302)
Name: NF21658_low_14
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 25070458 - 25070178
Alignment:
| Q |
4 |
atgtcgaagaatatatggcagtcttcaatcatacatgttcaatagtagaggggtggacaaaactttatcatggtttttcagcatgtgggtaatgaaagtt |
103 |
Q |
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| T |
25070458 |
atgtcaaagaaaatatggcagtcttcaatcatacatgttcaatagtagaggggtgggcaaaactttatcatggtttttcagcatgtgggtaatgaaagtt |
25070359 |
T |
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| Q |
104 |
gattttgtgttgtgatttaattgagccaattgttgggtctttgatactatatgttcattaatcataaatggatgatttttggcttattcaaag-nnnnnn |
202 |
Q |
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| T |
25070358 |
gattttgtgttgtgatttaattgagccaattgttgggtctttgatactatatgttcattaatcataaattgatgatttttggcttattcaaagaaaaaaa |
25070259 |
T |
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| Q |
203 |
nntggtgattataacttgatctcatgttttttcaccatgagagtagtgaaacttgactcagtattttaatctagccatgttga |
285 |
Q |
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| T |
25070258 |
aatggtgattataacttga--tcatgttttttcaccatgagagtagtgaaacttgactcagtattttaatctagccatgttga |
25070178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 25083709 - 25083653
Alignment:
| Q |
231 |
ttttcaccatgagagtagtgaaacttgactcagtattttaatctagccatgttgatg |
287 |
Q |
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| T |
25083709 |
ttttcaccatgtgagtagtgaaatttgactcagtattttaatcgagccatgttgatg |
25083653 |
T |
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