View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21658_low_15 (Length: 299)
Name: NF21658_low_15
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 16558931 - 16558640
Alignment:
| Q |
1 |
cctgccaatttgatgtcatttcttgttgttgatcaaccatctttgctttaaaaagaagcactgcagtggacaaaaagataattactactaattttcaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16558931 |
cctgccaatttgatgtcatttcttgttgttgatcaaccatctttgctttaaaaagaagcactgcagtggacaaaaagataattactactaattttatata |
16558832 |
T |
|
| Q |
101 |
gtgataggatatgaaaatattcaaacaaaacaataaactggttttatgcaagtgtaattggtatgaattgagtggaatgggacttcaagcttacattctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16558831 |
gtgataggatatgaaaatattcaaacaaaacaataaactggttttatgcaagtgtaattggtatgaattgagtggaatgggacttcaagcttacattctt |
16558732 |
T |
|
| Q |
201 |
tttccaaaagttgcattttcctgtttaagtcatttttctcttcctgctcagccataagacaatctttcaaatcccgaatttcagaattatct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16558731 |
tttccaaaagttgcattttcctgtttaagtcgtttttctcttcctgctcagccataagacaatctttcaaatcccgaatttcagaactatct |
16558640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University