View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21658_low_16 (Length: 282)
Name: NF21658_low_16
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 46019485 - 46019228
Alignment:
| Q |
8 |
agagatgaaccggtcaatttcggctaggggttaaaatagttcaatctaattcaattggagcgtgcattcgggaaggtagaagcgaaccttttaaggtcct |
107 |
Q |
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| T |
46019485 |
agagaagaaccggtcaatttcggctaggggttaaaatagttcaatctaattcaattggagcgtgcattcgggaaggtagaagcgaaccttttaaggtcct |
46019386 |
T |
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| Q |
108 |
ggatgttcgaggaaagggtaaggtcctaaatctccgacaaactttagtaattaatcgttaaaaaatgtatatggaatatcttgattttgatttttacatt |
207 |
Q |
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| T |
46019385 |
ggatgttcgaggaaagggtaaggtcctaaatctccgacaaactttagtaattaatcgttaaaaaatgtatatgggatatcttgattttgatttttacatt |
46019286 |
T |
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| Q |
208 |
tttatgtgttgacttttgatcatttcagcttacgagaagcgcgatcgtccatcattga |
265 |
Q |
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| T |
46019285 |
tttatgtgttgacttttgatcatttcagcttacgagaagcgcgatcgtccatcattga |
46019228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 46032147 - 46031988
Alignment:
| Q |
18 |
cggtcaatttcggctaggggttaaaatagttcaatctaattcaattggagcgtgcattcgggaaggtagaagcgaaccttttaaggtcctggatgttcga |
117 |
Q |
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| T |
46032147 |
cggtcaatttcggctaggggttaaaatagttcaatctaattcaattggagtgtgcattcgagaaggtagaagcgaaccttttaaggtcctggatgttcga |
46032048 |
T |
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| Q |
118 |
ggaaagggtaaggtcctaaatctccgacaaactttagtaattaatcgttaaaaaatgtatat |
179 |
Q |
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| T |
46032047 |
ggaaagagtaa-gtcctaaacctccgacaaatgttagtaattagt-tttaaaaaatgtatat |
46031988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 46031946 - 46031864
Alignment:
| Q |
186 |
tcttgattttgatttttaca-tttttatgtg--ttgacttttgatcatttcagcttacgagaagcgcgatcgtccatcattga |
265 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||| |
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| T |
46031946 |
tcttgattttgatttttacactttttatgtgctttgacttttgatcatttcagattacgagaaacacgatcgtccatcgttga |
46031864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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