View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21658_low_20 (Length: 241)

Name: NF21658_low_20
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21658_low_20
NF21658_low_20
[»] chr1 (2 HSPs)
chr1 (22-228)||(6841134-6841340)
chr1 (58-228)||(1177585-1177755)
[»] chr6 (8 HSPs)
chr6 (70-172)||(34169167-34169269)
chr6 (39-163)||(34106057-34106181)
chr6 (39-165)||(34146730-34146856)
chr6 (39-165)||(34159346-34159472)
chr6 (39-145)||(34115028-34115134)
chr6 (40-165)||(34149221-34149346)
chr6 (40-165)||(34161837-34161962)
chr6 (39-163)||(34119571-34119695)
[»] scaffold0620 (1 HSPs)
scaffold0620 (39-153)||(6547-6661)
[»] chr4 (1 HSPs)
chr4 (98-176)||(31106717-31106795)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 6841340 - 6841134
Alignment:
Q  22 tgtgatggatttgtgtgcagagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  6841340 tgtgatggatttgtgtgcagagagaatgaactggtcgagtttaaactcagatttacagatagagatactatttcatctaccggtaaaatcattgatgcgt 6841241  T
Q  122 ttcaaatctgttgaaaaatcttggaacattcttttcaaaactccatattttgtgaataggtggaaactgcacaattctgaaaaccgtaaaggtcatagtc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6841240 ttcaaatctgttgaaaaatcttggaacattcttttcaaaactccatattttgtgaataggtggaaactgcacaattctgaaaaccgtaaaggccatagtc 6841141  T
Q  222 tcatgat 228  Q
    |||||||    
T  6841140 tcatgat 6841134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 1177585 - 1177755
Alignment:
Q  58 gagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaaatcttggaacattcttttc 157  Q
    |||||||  |||||||||  |||||||||||||||||||||| ||||| ||||| |||||||| ||||||| |||||||||||| |||||||||||  ||    
T  1177585 gagtttaggctcagatttggagatagagatactacttcatctgccagtgaaatcgttgatgcgattcaaatgtgttgaaaaatcatggaacattctgatc 1177684  T
Q  158 aaaactccatattttgtgaataggtggaaactgcacaattctgaaaaccgtaaaggtcatagtctcatgat 228  Q
    |||| ||| | |||||||||||||||||  |  ||||||||| || ||  |||||| ||||||||||||||    
T  1177685 aaaagtccctcttttgtgaataggtggaggcgtcacaattctaaatacgataaaggccatagtctcatgat 1177755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 34169167 - 34169269
Alignment:
Q  70 agatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaaatcttggaacattcttttcaaaactccatat 169  Q
    |||| ||| ||| ||||||||| ||| |||||||||||||||| | |||||||||||||  ||| ||  ||||||||||||||| ||||||||||||| |    
T  34169167 agatctacggatggagatactagttcgtctaccagtaaaatcactaatgcgtttcaaatgcgttcaacgatcttggaacattctattcaaaactccatct 34169266  T
Q  170 ttt 172  Q
    |||    
T  34169267 ttt 34169269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 34106057 - 34106181
Alignment:
Q  39 cagagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaa 138  Q
    ||||||||||||| ||| | ||||||||   |||| |||||||||||||| || ||| ||||||   ||||||||||||||||||||||  |||| ||      
T  34106057 cagagagaatgaattgggcaagtttaactgaagatctacagatagagatattagttcgtctaccgagaaaatcattgatgcgtttcaaaagtgttcaacg 34106156  T
Q  139 atcttggaacattcttttcaaaact 163  Q
     |||||||||||||| || ||||||    
T  34106157 gtcttggaacattctatttaaaact 34106181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 34146730 - 34146856
Alignment:
Q  39 cagagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaa 138  Q
    ||||||||||||| ||| | |||||||    |||| |||| |||||||||||| ||| ||||||   ||||||  ||||||||||||||| |||| |       
T  34146730 cagagagaatgaattgggcaagtttaaataaagatctacaaatagagatactagttcgtctacccaaaaaatcgctgatgcgtttcaaatgtgttcagct 34146829  T
Q  139 atcttggaacattcttttcaaaactcc 165  Q
    ||||||||||||||| |||||||||||    
T  34146830 atcttggaacattctattcaaaactcc 34146856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 34159346 - 34159472
Alignment:
Q  39 cagagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaa 138  Q
    ||||||||||||| ||| | |||||||    |||| |||| |||||||||||| ||| ||||||   ||||||  ||||||||||||||| |||| |       
T  34159346 cagagagaatgaattgggcaagtttaaataaagatctacaaatagagatactagttcgtctacccaaaaaatcgctgatgcgtttcaaatgtgttcagct 34159445  T
Q  139 atcttggaacattcttttcaaaactcc 165  Q
    ||||||||||||||| |||||||||||    
T  34159446 atcttggaacattctattcaaaactcc 34159472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 34115028 - 34115134
Alignment:
Q  39 cagagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaa 138  Q
    ||||||||||||| |||   ||||||||   |||| |||||||||||||||||  || |||||| | |||||| ||||||||||||||||  ||| || |    
T  34115028 cagagagaatgaattgggaaagtttaactgaagatctacagatagagatactaactcgtctaccggaaaaatcgttgatgcgtttcaaatgcgttcaaca 34115127  T
Q  139 atcttgg 145  Q
    |||||||    
T  34115128 atcttgg 34115134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 34149221 - 34149346
Alignment:
Q  40 agagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaaa 139  Q
    |||||||||||| |||   ||||||||   |||| |||| ||||||||||||  || ||| || |||||||| ||||||||||||||||  ||| ||  |    
T  34149221 agagagaatgaattgggaaagtttaactgaagatctacatatagagatactagctcgtctccctgtaaaatcgttgatgcgtttcaaatgcgttcaacga 34149320  T
Q  140 tcttggaacattcttttcaaaactcc 165  Q
    |||||| | ||||| ||| |||||||    
T  34149321 tcttgggagattctattcgaaactcc 34149346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 34161837 - 34161962
Alignment:
Q  40 agagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaaa 139  Q
    |||||||||||| |||   ||||||||   |||| |||| ||||||||||||  || ||| || |||||||| ||||||||||||||||  ||| ||  |    
T  34161837 agagagaatgaattgggaaagtttaactgaagatctacatatagagatactagctcgtctccctgtaaaatcgttgatgcgtttcaaatgcgttcaacga 34161936  T
Q  140 tcttggaacattcttttcaaaactcc 165  Q
    |||||| | ||||| ||| |||||||    
T  34161937 tcttgggagattctattcgaaactcc 34161962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 34119571 - 34119695
Alignment:
Q  39 cagagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaa 138  Q
    ||||||||||||| ||| | |||||||    |||| |||| |||||||||||| ||| ||||||   ||||||  |||||| |||||||| |||| |       
T  34119571 cagagagaatgaattgggcaagtttaaatgaagatctacaaatagagatactagttcgtctacccaaaaaatcgctgatgcatttcaaatgtgttcagct 34119670  T
Q  139 atcttggaacattcttttcaaaact 163  Q
    || |||||||||||| |||||||||    
T  34119671 attttggaacattctattcaaaact 34119695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 6547 - 6661
Alignment:
Q  39 cagagagaatgaactggtcgagtttaacctcagatttacagatagagatactacttcatctaccagtaaaatcattgatgcgtttcaaatctgttgaaaa 138  Q
    ||||||||||||| ||| | |||||||    |||| |||||||||||||| || ||| ||||||   ||||||||||||||||| ||||  |||| ||      
T  6547 cagagagaatgaattgggcaagtttaagtgaagatctacagatagagatattagttcgtctaccgaaaaaatcattgatgcgttacaaaagtgttcaacg 6646  T
Q  139 atcttggaacattct 153  Q
    |||||||||||||||    
T  6647 atcttggaacattct 6661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 31106717 - 31106795
Alignment:
Q  98 ctaccagtaaaatcattgatgcgtttcaaatctgttgaaaaatcttggaacattcttttcaaaactccatattttgtga 176  Q
    ||||||| ||||||||||||||||  ||||| |||| ||| ||| ||||||| |||  | |||||||| ||||||||||    
T  31106717 ctaccagcaaaatcattgatgcgtagcaaatgtgttcaaagatcatggaacaatctcattaaaactccctattttgtga 31106795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University