View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21658_low_4 (Length: 509)

Name: NF21658_low_4
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21658_low_4
NF21658_low_4
[»] chr2 (2 HSPs)
chr2 (1-395)||(14768845-14769238)
chr2 (388-509)||(14769234-14769355)
[»] chr8 (9 HSPs)
chr8 (1-279)||(7166591-7166869)
chr8 (1-157)||(3269111-3269267)
chr8 (75-190)||(31173812-31173927)
chr8 (1-137)||(3264453-3264589)
chr8 (6-157)||(3288384-3288535)
chr8 (62-275)||(3400608-3400821)
chr8 (77-155)||(13806935-13807013)
chr8 (57-154)||(13785638-13785735)
chr8 (52-152)||(3409295-3409395)
[»] chr5 (3 HSPs)
chr5 (2-152)||(30415929-30416079)
chr5 (75-278)||(20836335-20836538)
chr5 (75-278)||(20809980-20810183)
[»] chr3 (2 HSPs)
chr3 (12-131)||(32412901-32413020)
chr3 (19-121)||(6907789-6907891)
[»] scaffold0468 (1 HSPs)
scaffold0468 (33-140)||(8209-8316)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 14768845 - 14769238
Alignment:
Q  1 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14768845 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattgtagatggatttggctgtggttgttttaccagatc 14768944  T
Q  101 cacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcacacgaggttccaacccaactgggaactc 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14768945 cacccattccctagatccctatcatacaaacattgcttgaatgtttttcaataaactcggccactttttgcacacgaggttccaacccaactgggaactc 14769044  T
Q  201 ggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcattccttagataattataaaacacaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769045 ggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccgacaatttgctttactagttcaccttcattccttagataattataaaacacaaaa 14769144  T
Q  301 caacacaacacatagaatgagaataaattacnnnnnnnnnnctatagggctctatttggccagatcaaaccactagtttatagaggaaagttata 395  Q
    |||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769145 caacacaacacatagaatgagaataaattac-aaaaaaaaactataaggctctatttggccagatcaaaccactagtttatagaggaaagttata 14769238  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 388 - 509
Target Start/End: Complemental strand, 14769355 - 14769234
Alignment:
Q  388 aagttataagttcaaacgttgcttaaagtagcatgtcaaaattcgctataatctagtgaagaaacattataaactcattagagaatgaccttactttgag 487  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769355 aagttataagttcaaaggttgcttaaagtagcatgtcaaaattcgctataatctagtgaagaaacattataaactcattagagaatgaccttactttgag 14769256  T
Q  488 catacaagttcatgcgctataa 509  Q
    ||||||||||||||||||||||    
T  14769255 catacaagttcatgcgctataa 14769234  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 7166591 - 7166869
Alignment:
Q  1 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 100  Q
    ||||||||  ||||||| |  ||||||| ||||||||||| || ||| |||||||||||| |||||||||||| ||||||||||||||||||||| || |    
T  7166591 ttttcacatacttctctaacgttttcaatgaaacttctattcaaaaatttgcgatgaatttgattatagatggctttggctgtggttgttttacccgacc 7166690  T
Q  101 cacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcacacgaggttccaacccaactgggaactc 200  Q
      ||||||||||| ||||||||||||||||| |||||||  ||  || ||||||| ||   |||||| ||||  |||| |||||| |||||||| || ||    
T  7166691 tgcccattccccatatccctatcatacaaactttgcttggctgagttgcaataaattcaataactttgtgcatgcgagattccaatccaactggaaattc 7166790  T
Q  201 ggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcattcctt 279  Q
    |  ||||||||   |||   ||||||||||||  ||||  ||  ||||||||||||  ||||||||| ||||| |||||    
T  7166791 gataatagacaaggatgcgttgtctagttttgccaaaagatcctcaacaatttgctgcactagttcagcttcactcctt 7166869  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 3269111 - 3269267
Alignment:
Q  1 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 100  Q
    |||||| || ||||||| |||||||||| ||||||   ||  ||||| ||||||||||||   || |||||   | ||||||| ||||||||||| ||||    
T  3269111 ttttcataaacttctctaatattttcaatgaaactgtgatctacaaatttgcgatgaattttgttgtagatatctctggctgttgttgttttacctgatc 3269210  T
Q  101 cacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaact 157  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  3269211 cacccataccccagatccctatcatgcaaactttgcttgattgtttttcaataaact 3269267  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 31173927 - 31173812
Alignment:
Q  75 tttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcaca 174  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||| || || ||| |||| || || |||||||||| || || ||||||||||    
T  31173927 tttggctgtggttgttttcccggatccacccattccccatatccctatcatgcagactttgtttgattgattatcaataaacttggtaattttttgcaca 31173828  T
Q  175 cgaggttccaacccaa 190  Q
    || | |||||| ||||    
T  31173827 cgggattccaatccaa 31173812  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 3264453 - 3264589
Alignment:
Q  1 ttttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatc 100  Q
    |||||| || ||||||| |||||||| | ||||||| ||| | |||| |||||||| ||| | || |||| || |||||||||||||||||||||  | |    
T  3264453 ttttcataaacttctctaatattttcgatgaaacttttatcctcaaatttgcgatggatttggttgtagacggctttggctgtggttgttttacccaacc 3264552  T
Q  101 cacccattccccagatccctatcatacaaacattgct 137  Q
    ||||||||||||| || || ||||||||||| |||||    
T  3264553 cacccattccccatattcccatcatacaaactttgct 3264589  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 3288384 - 3288535
Alignment:
Q  6 acaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccaccc 105  Q
    |||| ||||||| |||||||||| |||||||  ||||| ||| ||   || |||| ||||  |||| | ||||||||| |||||||| || || ||||||    
T  3288384 acaaacttctctaatattttcaatgaaacttgcatgcataaatttcaaattaatttgattgaagatagctttggctgttgttgttttccccgacccaccc 3288483  T
Q  106 attccccagatccctatcatacaaacattgcttgaatgtttttcaataaact 157  Q
    ||||||||||||||| ||| |||||| |||||||| || |||| ||||||||    
T  3288484 attccccagatccctgtcaaacaaactttgcttgattgattttgaataaact 3288535  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 275
Target Start/End: Original strand, 3400608 - 3400821
Alignment:
Q  62 gattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggc 161  Q
    |||| ||||| | |||||| ||||||||||| || ||||||||||||||||| |||||||||||||| || |   |||| || |  |||||||||| ||     
T  3400608 gattgtagatagctttggccgtggttgttttcccggatccacccattccccatatccctatcatacagacttctgttgattgatgatcaataaacttggt 3400707  T
Q  162 aactttttgcacacgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttact 261  Q
    || || ||||||||| |  ||||| ||||| ||  | || | ||||||||  |||||  | ||||||||||  |||  |||  ||||||||||||| |||    
T  3400708 aatttgttgcacacgggaatccaatccaaccggatattcagtaatagacaacaatgagatatctagttttgccaaagtgtcctcaacaatttgcttcact 3400807  T
Q  262 agttcaccttcatt 275  Q
    ||||||||||||||    
T  3400808 agttcaccttcatt 3400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 13807013 - 13806935
Alignment:
Q  77 tggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaa 155  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||||  ||||| |||||||| || |||| ||||||    
T  13807013 tggctgttgttgttttacctgatccacccatcccccagatccctatcaagcaaactttgcttgattgatttttaataaa 13806935  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 13785735 - 13785638
Alignment:
Q  57 aattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataa 154  Q
    |||| |||| ||||||| |||||||||||||||||| || ||||||||||| ||||||||||| ||    ||||||||| |||| || ||||||||||    
T  13785735 aatttgattgtagatggctttggctgtggttgttttccccgatccacccataccccagatccccatagagcaaacattgtttgattgattttcaataa 13785638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 3409295 - 3409395
Alignment:
Q  52 cgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaa 151  Q
    |||||||||  ||| ||||||| |||||||   ||||||||||| ||||| ||||| ||||||||||||| ||||||||||| ||  |||||||| ||||    
T  3409295 cgatgaatttcattgtagatggctttggctacagttgttttacctgatcctcccatgccccagatccctaccatacaaacatcgcccgaatgtttctcaa 3409394  T
Q  152 t 152  Q
    |    
T  3409395 t 3409395  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 30416079 - 30415929
Alignment:
Q  2 tttcacaagcttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatcc 101  Q
    ||||||||| |||||| |||||||| | ||||||||| | |||||| |||||||||||| |||| ||||||| ||||||||  || ||||||||  | ||    
T  30416079 tttcacaagtttctctaatattttcgatgaaacttctgtacacaaatttgcgatgaatttgattgtagatggctttggctgccgtagttttacccaaccc 30415980  T
Q  102 acccattccccagatccctatcatacaaacattgcttgaatgtttttcaat 152  Q
     ||||||||||| || |||||||||||||| ||  ||||||  ||||||||    
T  30415979 tcccattccccatatgcctatcatacaaacctttgttgaattattttcaat 30415929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 20836538 - 20836335
Alignment:
Q  75 tttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcaca 174  Q
    |||||| ||||||||||| ||  |||||||||||||||| |||||||| ||||| || |||| ||| || |  ||||||| || || || || |||||||    
T  20836538 tttggccgtggttgttttgcctaatccacccattccccatatccctatgatacagactttgcatgattgatcatcaataatcttggtaatttgttgcaca 20836439  T
Q  175 cgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcat 274  Q
     | | |||||| ||||  || || || | ||||||||  |||||  | ||||||||| | |||| |||  |||||||| |||  ||||||||||||||||    
T  20836438 tgggattccaatccaatcggaaattcagtaatagacaacaatgagatatctagttttctcaaaatgtcctcaacaattagctccactagttcaccttcat 20836339  T
Q  275 tcct 278  Q
    ||||    
T  20836338 tcct 20836335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 20810183 - 20809980
Alignment:
Q  75 tttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaacattgcttgaatgtttttcaataaactcggcaactttttgcaca 174  Q
    |||||| ||||||||||| || ||||||||||||||||| |||||||| ||||| || || | ||| || |  ||||||| || || || || |||||||    
T  20810183 tttggccgtggttgttttgcctgatccacccattccccatatccctatgatacagactttccatgattgatcatcaataatcttggtaatttgttgcaca 20810084  T
Q  175 cgaggttccaacccaactgggaactcggaaatagacagaaatgaactgtctagttttgtgaaaacgtcaccaacaatttgctttactagttcaccttcat 274  Q
    || | |||||| |||| |||  | || | ||||||||  |||||  | | ||||||||| |||| ||   |||||||   ||| ||||||||||||||||    
T  20810083 cgggattccaatccaattggatattcagtaatagacaacaatgagatatttagttttgtcaaaatgtactcaacaatacccttcactagttcaccttcat 20809984  T
Q  275 tcct 278  Q
    ||||    
T  20809983 tcct 20809980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 32412901 - 32413020
Alignment:
Q  12 ttctctgatattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccc 111  Q
    |||||| || ||||||| ||| |||||||   |||| |||||||  ||| |||||||||||| ||| ||||||||||||||||| ||||| |||||||||    
T  32412901 ttctctaatgttttcaatgaagcttctatctgcaaatttgcgattgatttgattatagatggcttttgctgtggttgttttacctgatccccccattccc 32413000  T
Q  112 cagatccctatcatacaaac 131  Q
    || ||||||||||| |||||    
T  32413001 caaatccctatcatgcaaac 32413020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 6907789 - 6907891
Alignment:
Q  19 atattttcaacgaaacttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatcc 118  Q
    ||||| |||| |||||||||||||||||| ||||||||||||  ||| ||||||  |||||||||||| ||||||||  | || ||||||||||| ||||    
T  6907789 atattctcaatgaaacttctatgcacaaatttgcgatgaattttattgtagatgcctttggctgtggtagttttacccaacccgcccattccccaaatcc 6907888  T
Q  119 cta 121  Q
    |||    
T  6907889 cta 6907891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 8209 - 8316
Alignment:
Q  33 acttctatgcacaaacttgcgatgaattcgattatagatggatttggctgtggttgttttaccagatccacccattccccagatccctatcatacaaaca 132  Q
    ||||||||||||||||||| ||||||||  ||| ||||    ||||||| |||| ||||||||  | || ||||| ||||||||||||| |||  ||||     
T  8209 acttctatgcacaaacttgtgatgaattttattgtagacacctttggctatggtagttttacccaacccgcccatgccccagatccctaccatggaaact 8308  T
Q  133 ttgcttga 140  Q
    ||||||||    
T  8309 ttgcttga 8316  T

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