View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21658_low_5 (Length: 493)
Name: NF21658_low_5
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_low_5 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 3088081 - 3088420
Alignment:
| Q |
19 |
attaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088081 |
attaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttg |
3088180 |
T |
|
| Q |
119 |
tgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088181 |
tgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatg |
3088280 |
T |
|
| Q |
219 |
gaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgatgaaacttaagttgctatatatttgcttgaaaaacaagggatctaagccta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3088281 |
gaatcaacacagcatgtggctttttatcaacaaagtaactcatctttgatgaaacttaagttgctatatatttgcttgaaaaacaagggatcaaagcctt |
3088380 |
T |
|
| Q |
319 |
tgcttttatagaaaaaatacaattttaaaatggttaaggt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3088381 |
tgcttttatagaaaaaatacaattttaaaatagttaaggt |
3088420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 480
Target Start/End: Original strand, 3088489 - 3088548
Alignment:
| Q |
421 |
gctggctttgaatgactttttctctttattaagaaagctcaaccttataatattcatctc |
480 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
3088489 |
gctggctttgaatgactttttctgtttattaaaaaagctcaaccttataatattcctctc |
3088548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 275
Target Start/End: Complemental strand, 4258965 - 4258709
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||||||| ||||||| |||||||||||| | ||| |||||||||||| |||||||| |||||| |
|
|
| T |
4258965 |
accttccactggagtcagaccatcttgaatagtctcaaaggtaaaatcaatgaaaccatcaacggcattttcacctcttgatttgagcaaacgtttgtga |
4258866 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
|| ||||| || |||||||||||||||||||| ||||||| ||||||||| || |||||||| ||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
4258865 |
ttatattcagtgttgacaaaggttatgtgaaaacctttaaagtgaagaagcttagctagtttgaacaatggattgatatggccttgagctggatatggaa |
4258766 |
T |
|
| Q |
222 |
tcaacacagcatgtggcttt---ttatcaacaaagtaactcatctttgatgaaactt |
275 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||| ||||||| |
|
|
| T |
4258765 |
tcaacacagcatgtggctttttattatcagcaaaataactcatctttgaggaaactt |
4258709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 4513764 - 4513553
Alignment:
| Q |
26 |
tccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgt |
125 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||| |||||| ||||||||||||| || ||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
4513764 |
tccattggagttaaaccatcaggaatagtctcaaagcgaaaatcggtgaaaccatcaaaagcattaggacctcttgatttgagcaaacgtttgtgattgt |
4513665 |
T |
|
| Q |
126 |
attcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaa |
225 |
Q |
| |
|
||||||| || ||||||||||||||||||||| |||||||||| |||||||||| | | |||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4513664 |
attcggtgttaacaaaggttatgtgaaagcctctaaggtgaagtagttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaa |
4513565 |
T |
|
| Q |
226 |
cacagcatgtgg |
237 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4513564 |
cacagcatgtgg |
4513553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 4517680 - 4517897
Alignment:
| Q |
23 |
ccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgat |
122 |
Q |
| |
|
||||| || ||||||| ||||||| | |||||||||||| |||||||||||||||||||| | || | |||||||||||| |||||||| ||||||| |
|
|
| T |
4517680 |
ccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaacgtttgtgat |
4517779 |
T |
|
| Q |
123 |
tgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaat |
222 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| | |
|
|
| T |
4517780 |
tgtattcggtgttgacaaaggttatgtgaaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatggagt |
4517879 |
T |
|
| Q |
223 |
caacacagcatgtggctt |
240 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
4517880 |
tatcactgcatgtggctt |
4517897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 4581354 - 4581578
Alignment:
| Q |
23 |
ccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgat |
122 |
Q |
| |
|
||||| || ||||||| ||||||| | |||||||||||| |||||| ||||||||||||| | || | |||||||||||| ||||| || ||||||| |
|
|
| T |
4581354 |
ccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacgcttttggacctcttgatttgagcaagcgtttgtgat |
4581453 |
T |
|
| Q |
123 |
tgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaat |
222 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |||||| | ||||| |||||||||||||||||||| |
|
|
| T |
4581454 |
tgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtgttattaatggagtgatatgtccttgaagtggatatggaat |
4581553 |
T |
|
| Q |
223 |
caacacagcatgtggctttttatca |
247 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
4581554 |
caacactgcatgtggctttttatca |
4581578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 4265845 - 4265627
Alignment:
| Q |
23 |
ccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgat |
122 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||| ||| ||| ||||||||||||||||||| | |||||||||||| ||||| || ||||||| |
|
|
| T |
4265845 |
ccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgat |
4265746 |
T |
|
| Q |
123 |
tgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaat |
222 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| ||||||||||||| ||| |||| || ||||||| ||| ||||| ||||||| |||| |||||| |
|
|
| T |
4265745 |
tgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttcctagattgaacaatgcattgatatggccttgaaatggagctggaat |
4265646 |
T |
|
| Q |
223 |
caacacagcatgtggcttt |
241 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4265645 |
caacacagcatgtggcttt |
4265627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 4623646 - 4623905
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||||||||| |||| ||||||| | || ||||||||| ||| || ||||||||||||| | || | |||||||||||| ||||| || |||||| |
|
|
| T |
4623646 |
accttccattggtgttaaaccatctggaatggtctcaaagttaaagtccgtgaaaccatcaaaggcctttggacctcttgatttgagcaagcgtttgtga |
4623745 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
4623746 |
ttgtattcggtgtgaccaaaggttatgtgaaagcctttaaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaa |
4623845 |
T |
|
| Q |
222 |
tcaacacagcatgtggcttt------ttatcaacaaagtaactcatctttgatgaaactt |
275 |
Q |
| |
|
|||||||||||||||||||| |||| | |||| |||||||||||||||||||||| |
|
|
| T |
4623846 |
tcaacacagcatgtggctttttattattattagcaaaataactcatctttgatgaaactt |
4623905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 4603449 - 4603662
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
||||||||| || ||||| |||||| |||| || |||||| |||||||||||| || || | | ||||| |||||||||||| |||||||| |||||| |
|
|
| T |
4603449 |
accttccatcggtgttagtccatctgggattgtttcaaagctaaaatcagtgaagccgtctaaggcattaggacctcttgatttgagcaaacgtttgtga |
4603548 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||| |||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
4603549 |
ttgtattcggtgttgacaaaggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaacattggattgatatggccttgaagtggatatggaa |
4603648 |
T |
|
| Q |
222 |
tcaacacagcatgt |
235 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4603649 |
tcaacacagcatgt |
4603662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 4507254 - 4507465
Alignment:
| Q |
26 |
tccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgt |
125 |
Q |
| |
|
||||||||||||| ||||||| | | |||||||||| |||||||||||||||||||| | ||| |||||||||||| ||||| || |||||||||| |
|
|
| T |
4507254 |
tccattggagttaaaccatctggtagagtctcaaagttaaaatcagtgaaaccatcaaaggcattttcacctcttgatttgagcaagcgtttgtgattgt |
4507353 |
T |
|
| Q |
126 |
attcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaa |
225 |
Q |
| |
|
||||||| || ||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
4507354 |
attcggtgttaacaaaggttatgtgaaagcctcgaaggtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaa |
4507453 |
T |
|
| Q |
226 |
cacagcatgtgg |
237 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4507454 |
cacagcatgtgg |
4507465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 4594349 - 4594564
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||||||||| |||||||||||| | || || |||||| |||| ||| ||||||||| | | ||| | |||||||||||| |||||||| || ||| |
|
|
| T |
4594349 |
accttccattggtgttagaccatctggtatggtttcaaagctaaaaccagggaaaccatctaaggcatttggacctcttgatttgagcaaacgtttatga |
4594448 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4594449 |
ttgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaa |
4594548 |
T |
|
| Q |
222 |
tcaacacagcatgtgg |
237 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4594549 |
tcaacacagcatgtgg |
4594564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 4558472 - 4558689
Alignment:
| Q |
30 |
ttggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattc |
129 |
Q |
| |
|
||||||||| |||||| | |||||||||||| |||||||||||||||||||| | ||| | ||||||||| || ||||| || ||||| |||||||| |
|
|
| T |
4558472 |
ttggagttaaaccatccggaatagtctcaaagctaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattc |
4558571 |
T |
|
| Q |
130 |
ggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacaca |
229 |
Q |
| |
|
|| || ||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| |||||| |
|
|
| T |
4558572 |
agtgtttacataggttatgtgaaatcctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacaca |
4558671 |
T |
|
| Q |
230 |
gcatgtggctttttatca |
247 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
4558672 |
gcatgtggttttttatca |
4558689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 4618640 - 4618855
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||||||||| |||| ||||||| | || |||||||| ||| || ||||||||||||| || || | |||||||||||| ||||| || |||||| |
|
|
| T |
4618640 |
accttccattggtgttaaaccatctggaatgctctcaaagttaaagtccgtgaaaccatcaaaagcctttggacctcttgatttgagcaagcgtttgtga |
4618739 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
4618740 |
ttgtattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaa |
4618839 |
T |
|
| Q |
222 |
tcaacacagcatgtgg |
237 |
Q |
| |
|
||| |||| ||||||| |
|
|
| T |
4618840 |
tcatcacaacatgtgg |
4618855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 4482204 - 4482450
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||| |||||||||| ||||||| | || || |||||| |||||||||||||||||||| | || | ||| |||||||| |||||||| |||||| |
|
|
| T |
4482204 |
accttcaattggagttaaaccatctggtatcgtttcaaaggtaaaatcagtgaaaccatcaaaggcttttggaccccttgattttagcaaacgtttgtga |
4482303 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||| ||| ||||||| ||| ||||| |||||| |||| ||||| |
|
|
| T |
4482304 |
ttgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctggaaatggag |
4482403 |
T |
|
| Q |
222 |
tcaacacagcatgtggctttttatcaacaaagtaactcatctttgat |
268 |
Q |
| |
|
||||||| |||||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
4482404 |
tcaacactgcatgtggttttttttctgcaaagttactcatctttgat |
4482450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 4575791 - 4576033
Alignment:
| Q |
19 |
attaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttg |
118 |
Q |
| |
|
|||||| ||| ||||||||| ||||||| | |||||||||||| ||| |||||||||||||||| | ||| |||||||||||| |||||||| ||| |
|
|
| T |
4575791 |
attaccatcctttggagttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttg |
4575890 |
T |
|
| Q |
119 |
tgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatg |
218 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||| |||||||||| |||||||||| ||| ||||||| ||| ||||| ||||||| |||| ||| |
|
|
| T |
4575891 |
tgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatg |
4575990 |
T |
|
| Q |
219 |
gaatcaacacagcatgtggctttttatcaacaaagtaactcat |
261 |
Q |
| |
|
|| | ||||| |||||||||||||| || |||||| |||||| |
|
|
| T |
4575991 |
gagttaacactgcatgtggctttttctcttcaaagttactcat |
4576033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 4627489 - 4627707
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||| | ||| |||| ||||||| | || ||||||||| ||||||| ||||||||||| | ||| |||||||||||| |||||||| |||||| |
|
|
| T |
4627489 |
accttctagtggtgttaaaccatctggtatggtctcaaaggtaaaatcatcgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtga |
4627588 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| |||||||||| | |||||||||| | ||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
4627589 |
ttgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagtaattttgctagtatcaacaatggattgatatggccttgaagtggaaatggaa |
4627688 |
T |
|
| Q |
222 |
tcaacacagcatgtggctt |
240 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4627689 |
tcaacacagcatgtggctt |
4627707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 268
Target Start/End: Complemental strand, 4488978 - 4488740
Alignment:
| Q |
30 |
ttggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattc |
129 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| ||||||||| |||||||||| | ||| | |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
4488978 |
ttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc |
4488879 |
T |
|
| Q |
130 |
ggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacaca |
229 |
Q |
| |
|
|| |||||||||||||||||||| ||| |||||||||| |||||| ||||||| ||||||| ||| ||||| ||||||| |||| |||| | ||||| |
|
|
| T |
4488878 |
agtgttgacaaaggttatgtgaaatcctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacact |
4488779 |
T |
|
| Q |
230 |
gcatgtggctttttatcaacaaagtaactcatctttgat |
268 |
Q |
| |
|
|||||||||||| | || |||||| ||||||||||||| |
|
|
| T |
4488778 |
gcatgtggctttctctcttcaaagttactcatctttgat |
4488740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 4612492 - 4612292
Alignment:
| Q |
37 |
tagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattcggtattg |
136 |
Q |
| |
|
|||||||||| | |||| ||||||| |||||||||||||||| ||| | ||| | |||||||||||| ||||| || ||||||||||||||||| ||| |
|
|
| T |
4612492 |
tagaccatctggtatagcctcaaaggtaaaatcagtgaaaccaacaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttg |
4612393 |
T |
|
| Q |
137 |
acaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtg |
236 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||||||||||| | |||||||| ||||| ||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
4612392 |
acgaatgttatgtgaaagcctctaaggtgaagaagttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtg |
4612293 |
T |
|
| Q |
237 |
g |
237 |
Q |
| |
|
| |
|
|
| T |
4612292 |
g |
4612292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 3173342 - 3173588
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
||||||||||| ||||| ||||||| | |||||||||||| ||||||| |||||||||||| | ||| | ||| ||||||| ||||| || |||||| |
|
|
| T |
3173342 |
accttccattgaagttaaaccatctggtatagtctcaaagttaaaatcattgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtga |
3173441 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
3173442 |
ttgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggag |
3173541 |
T |
|
| Q |
222 |
tcaacacagcatgtggctttttatcaacaaagtaactcatctttgat |
268 |
Q |
| |
|
| ||||| |||||||| ||| | | |||||| ||||||||||||| |
|
|
| T |
3173542 |
ttaacactgcatgtggttttctctttgcaaagttactcatctttgat |
3173588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 4462577 - 4462765
Alignment:
| Q |
53 |
gtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaa |
152 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||||| ||||||||| || ||||| | |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4462577 |
gtctcaaagttaaagtcagtgaaaccatctagagaattaggacctcttgaattgagcaagcaattgtgattgtattcagtgttgacaaaggttatgtgaa |
4462676 |
T |
|
| Q |
153 |
agcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt |
241 |
Q |
| |
|
| ||| |||||||||| |||||| ||||||| ||||||| ||| ||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
4462677 |
aacctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtggcttt |
4462765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 4471284 - 4471472
Alignment:
| Q |
53 |
gtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaa |
152 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| || ||||||||| || ||||| |||||||||||||| || |||||||| |||||||||| |
|
|
| T |
4471284 |
gtctcaaagttaaagtcagtgaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaa |
4471383 |
T |
|
| Q |
153 |
agcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt |
241 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||| ||| ||||| |||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
4471384 |
agcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggcttt |
4471472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 4569423 - 4569607
Alignment:
| Q |
32 |
ggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattcgg |
131 |
Q |
| |
|
||||||| ||||||| | |||||||||||| |||||||||||||||||||| | || | |||||||||||| |||||| | |||||||| |||| |
|
|
| T |
4569423 |
ggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaatgtttgtgatt----tcgg |
4569518 |
T |
|
| Q |
132 |
tattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatgga |
220 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| |
|
|
| T |
4569519 |
tgttgacaaaggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatggccttgaagtggatatgga |
4569607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 30 - 234
Target Start/End: Original strand, 4586979 - 4587183
Alignment:
| Q |
30 |
ttggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattc |
129 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| ||||||||| ||| |||||| | ||| | | ||||||| |||||||| || |||||||||||||| |
|
|
| T |
4586979 |
ttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaatcatcaaaggcatttggagctcttgacttaagcaaccgtttgtgattgtattc |
4587078 |
T |
|
| Q |
130 |
ggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacaca |
229 |
Q |
| |
|
|| || ||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||| ||||| ||||||| |||| |||| || |||||| |
|
|
| T |
4587079 |
agtgtttacaaaggttatgtgaaatcctcgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacaca |
4587178 |
T |
|
| Q |
230 |
gcatg |
234 |
Q |
| |
|
||||| |
|
|
| T |
4587179 |
gcatg |
4587183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 4565440 - 4565583
Alignment:
| Q |
94 |
acctcttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatgga |
193 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||| || |||||||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4565440 |
acctcttgattttagcaatcgtttatgattgtattcagtgttgacaaaggttatatgaaatcctctaaggtgaagaagttttgcaagtttgaacaatgga |
4565539 |
T |
|
| Q |
194 |
tttatatgaccttgaagtggatatggaatcaacacagcatgtgg |
237 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4565540 |
tttatatgtccttgaaatggagctggaatcaacacagcatgtgg |
4565583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 4572313 - 4572530
Alignment:
| Q |
30 |
ttggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattc |
129 |
Q |
| |
|
|||||| || ||||||| | ||| |||||||| ||||| ||||||||||||| | ||| ||||||||| || ||||| || |||||||||||||| |
|
|
| T |
4572313 |
ttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcattttgacctcttgacttgagcaaccgtttgtgattgtattc |
4572412 |
T |
|
| Q |
130 |
ggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacaca |
229 |
Q |
| |
|
|| || ||| ||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||| ||||| ||||||| ||||||||| || |||||| |
|
|
| T |
4572413 |
agtgtttacataggttatgtgaaaacctctaaggtgaagaaattttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacaca |
4572512 |
T |
|
| Q |
230 |
gcatgtggctttttatca |
247 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
4572513 |
gcatgtggttttttatca |
4572530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 4562009 - 4562199
Alignment:
| Q |
30 |
ttggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattc |
129 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| ||| |||||||||||||||| | ||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4562009 |
ttggagttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgattta-gcaaacgtttgtgattgtattc |
4562107 |
T |
|
| Q |
130 |
ggtattgacaaaggtt-atgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatgga |
220 |
Q |
| |
|
|| || ||||||||| |||||||||||| | |||||||| |||||||||| ||| ||||||| ||| ||||||||||||| |||| ||||| |
|
|
| T |
4562108 |
agtgttaacaaaggtttatgtgaaagcctcttaggtgaagcagttttgctattttcaacaatgcattgatatgaccttgaactggaaatgga |
4562199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 4599509 - 4599724
Alignment:
| Q |
29 |
attggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtatt |
128 |
Q |
| |
|
|||||||||| ||||||| | |||||||| ||| ||||||||||||||||| | ||||||||| |||||||||||| ||||| || ||||||||||| | |
|
|
| T |
4599509 |
attggagttaaaccatctggaatagtctcgaaggaaaaatcagtgaaaccattacgagaattaggacctcttgatttgagcaagcgtttgtgattgtact |
4599608 |
T |
|
| Q |
129 |
cggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacac |
228 |
Q |
| |
|
|||| || || |||||||||| ||| ||| |||||||||||| ||||||||||| | ||| |||| |||| ||||||| ||| |||||||||| || |
|
|
| T |
4599609 |
cggtgttcacgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaatagattgatatttccttgaattggtaatggaatcaatac |
4599708 |
T |
|
| Q |
229 |
agcatgtggcttttta |
244 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
4599709 |
tgcatgtagtttttta |
4599724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 4255481 - 4255354
Alignment:
| Q |
151 |
aaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggc---tttttatca |
247 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||| || ||| |||| ||||| ||||||| |||||||||||||||||||||||||||| || |||||| |
|
|
| T |
4255481 |
aaagcctttaagatgaagtaattttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtggcattttattatca |
4255382 |
T |
|
| Q |
248 |
acaaagtaactcatctttgatgaaactt |
275 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
4255381 |
gtaaaataactcatctttgatgaaactt |
4255354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 4503082 - 4502951
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||||| ||||||| ||||||| | || ||||||||| ||||||| |||||||||||| | ||| | |||||||||||| ||||| || |||||| |
|
|
| T |
4503082 |
accttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtga |
4502983 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaa |
153 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
4502982 |
ttgtattcggtgttgacaaaggttatgtgaaa |
4502951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 4497897 - 4497788
Alignment:
| Q |
159 |
taaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaact |
258 |
Q |
| |
|
|||||||||| | |||| ||||||| ||||||||||| ||||| |||| || |||| ||||| | ||||| |||||||||||||| || |||||| ||| |
|
|
| T |
4497897 |
taaggtgaagtaattttcctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtggctttttctcttcaaagttact |
4497798 |
T |
|
| Q |
259 |
catctttgat |
268 |
Q |
| |
|
|||||||||| |
|
|
| T |
4497797 |
catctttgat |
4497788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 4255526 - 4255478
Alignment:
| Q |
94 |
acctcttgatttaagcaaacggttgtgattgtattcggtattgacaaag |
142 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
4255526 |
acctcttgattcgagcaagcgtttgtgattgtattcggtgttgacaaag |
4255478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 2165 - 2384
Alignment:
| Q |
24 |
cttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgatt |
123 |
Q |
| |
|
|||||| |||||||| |||||| | |||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||| ||||| || || ||||| |
|
|
| T |
2165 |
cttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgatt |
2264 |
T |
|
| Q |
124 |
gtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatc |
223 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
2265 |
gtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaataatggattgatatggccttgaactggatatggaatc |
2364 |
T |
|
| Q |
224 |
aacacagcatgtggcttttt |
243 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
2365 |
aacacagcatgtggtttttt |
2384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 24104435 - 24104653
Alignment:
| Q |
23 |
ccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgat |
122 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||| ||| ||| ||||||||||||||||||||| | ||||||||| ||||| || ||||||| |
|
|
| T |
24104435 |
ccttccattggagttagaccatctggtatggtctcaaagttaaagtcattgaaaccatcaagagaattaggatctcttgattcgagcaagcgtttgtgat |
24104534 |
T |
|
| Q |
123 |
tgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaat |
222 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| ||||||||||||| ||| ||||||| ||||||| ||| ||||||||||||| |||| |||||| |
|
|
| T |
24104535 |
tgtattcggtgttcacgaaggttatgtgaaagcctctaaggtgaagaagctttcctagtttgaacaatgcattgatatgaccttgaaatggagctggaat |
24104634 |
T |
|
| Q |
223 |
caacacagcatgtggcttt |
241 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
24104635 |
caacacagcatgcggcttt |
24104653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 237
Target Start/End: Complemental strand, 2238 - 2025
Alignment:
| Q |
24 |
cttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgatt |
123 |
Q |
| |
|
|||||| |||||||| |||||| | |||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||| ||||| || || ||||| |
|
|
| T |
2238 |
cttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgatt |
2139 |
T |
|
| Q |
124 |
gtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatc |
223 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
2138 |
gtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatc |
2039 |
T |
|
| Q |
224 |
aacacagcatgtgg |
237 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
2038 |
atcacaacatgtgg |
2025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 1282785 - 1282987
Alignment:
| Q |
35 |
gttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattcggtat |
134 |
Q |
| |
|
|||||||||||| |||| || |||||| |||||||||||||||||| || | ||| | |||||||||||| ||||| || |||||||||||||| |||| |
|
|
| T |
1282785 |
gttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtat |
1282884 |
T |
|
| Q |
135 |
tgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatg |
234 |
Q |
| |
|
| ||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
1282885 |
taacaaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatg |
1282984 |
T |
|
| Q |
235 |
tgg |
237 |
Q |
| |
|
||| |
|
|
| T |
1282985 |
tgg |
1282987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 99 - 263
Target Start/End: Complemental strand, 20862522 - 20862358
Alignment:
| Q |
99 |
ttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttat |
198 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
20862522 |
ttgacttaagcaagcgtttgtgattgtattcagtattgacaaatgttatgtaaaagcctctaaggtgaagtagttttgctagttttaacattggattgat |
20862423 |
T |
|
| Q |
199 |
atgaccttgaagtggatatggaatcaacacagcatgtggctttttatcaacaaagtaactcatct |
263 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||| ||||| ||| |||| | |||||||| |
|
|
| T |
20862422 |
atgaccttgaagtggatatggagttaacactgcatgtggttttttctcagcaaaattactcatct |
20862358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 1675860 - 1676074
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || |||||| |||||||||||||||||| | | | | | |||||||||||| |||||||| |||||| |
|
|
| T |
1675860 |
accttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgtga |
1675959 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
|||||||| || |||||| |||||| ||| ||||| ||||||||| ||||||||||||||| ||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
1675960 |
ttgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaa |
1676059 |
T |
|
| Q |
222 |
tcaacacagcatgtg |
236 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
1676060 |
tgaacacagcatgtg |
1676074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 1097 - 1311
Alignment:
| Q |
22 |
accttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtga |
121 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || |||||| |||||||||||||||||| | | | | | |||||||||||| |||||||| |||||| |
|
|
| T |
1097 |
accttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaaacgtttgtga |
1196 |
T |
|
| Q |
122 |
ttgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaa |
221 |
Q |
| |
|
|||||||| || |||||| |||||| ||| ||||| ||||||||| ||||||||||||||| ||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
1197 |
ttgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaa |
1296 |
T |
|
| Q |
222 |
tcaacacagcatgtg |
236 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
1297 |
tgaacacagcatgtg |
1311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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