View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21658_low_6 (Length: 476)
Name: NF21658_low_6
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21658_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 170 - 459
Target Start/End: Complemental strand, 10902456 - 10902159
Alignment:
| Q |
170 |
aaattcaaggaagaatcaaagcaccaagaatcatggtgaagtttcaatcaagggtcaagaacatagctcaaaagaagaaagtgcagaaggcaggtccaat |
269 |
Q |
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| T |
10902456 |
aaattcaaggaagaaccaaagctccaagaatcatggtgaaggttcaatcaagggtcaagaacatagctcaaaagaagaaagtgtagaaggcaggtccaat |
10902357 |
T |
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| Q |
270 |
aattacaaagggaagaaaaagaaagttgagaagaaatacattcaatgctata--------atgcgaggtcaatttgcagctgaatccaagtctaagaagg |
361 |
Q |
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| T |
10902356 |
aattacaaagggtagaaaaagaaagttgagaagaaatacattcaatgatataactgtgagaagcggggtcattttgcagctgacttcaagtctaagaagg |
10902257 |
T |
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| Q |
362 |
ttgcaagagatagagcagatgaagaacagttttcctacaatgaagatgaatctgatgctgatggagttttattgatggctactatcaaaggtgaagat |
459 |
Q |
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| T |
10902256 |
ttgcaagagatagagcagatgaagaacagttttcctacaatgaagatgaatctgatgctggtggagttttattaatggctactatcaaaggtgaagat |
10902159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 10902479 - 10902570
Alignment:
| Q |
81 |
tcaaggcttgcttgcagatcttcaact--catttcatcaagattcttggatatctccaaggctactacaatatgatgaaactttgatatcaa |
170 |
Q |
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| T |
10902479 |
tcaaggcttgcttgcagatcttcaactttcatttcatcaagatttttggattcctccaaggctactacaatatgatgaaaccttgatgtcaa |
10902570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 10912428 - 10912528
Alignment:
| Q |
67 |
tcaattaatgagcttcaaggcttgcttgcagatcttcaact--catttcatcaagattcttggatatctccaaggctactacaatatgatgaaactttga |
164 |
Q |
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| T |
10912428 |
tcaattcacgagcttcaagactcgcttgcagatcttcaactttcatttcatcaagattcttgaattcctccaaggctactaaaatatgatcaaaccttga |
10912527 |
T |
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| Q |
165 |
t |
165 |
Q |
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| T |
10912528 |
t |
10912528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 382
Target Start/End: Complemental strand, 10912374 - 10912161
Alignment:
| Q |
179 |
gaagaatcaaagcaccaagaatcatggtgaagtttcaatcaagggtcaagaacatagctcaaaagaagaaagtgcagaaggcaggtcc---aataattac |
275 |
Q |
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| T |
10912374 |
gaagaatcaatgctccaagaatcaaggtgaggtt-caatcaagggtgaagaacacagctcaaaagaagaaagtggtgaaggtggatccgatgattattac |
10912276 |
T |
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| Q |
276 |
aaagggaagaaaaagaaagttgagaagaaatacattcaatgctataa-tgcga-------ggtcaatttgcagctgaatccaagtctaagaaggttgcaa |
367 |
Q |
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||| || |||| |||||||| ||||||||||| |||| ||| ||||| ||| | ||||| |||| | |||||| | ||| |||||||||||||| |
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| T |
10912275 |
aaatggcagaagaagaaagtcgagaagaaatatattctatgatataactgccagaggctgggtcattttgtatctgaatgctagtataagaaggttgcaa |
10912176 |
T |
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| Q |
368 |
gagatagagcagatg |
382 |
Q |
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| T |
10912175 |
gagatatagcagatg |
10912161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 451
Target Start/End: Original strand, 20694135 - 20694226
Alignment:
| Q |
360 |
ggttgcaagagatagagcagatgaagaacagttttcctacaatgaagatgaatctgatgctgatggagttttattgatggctactatcaaag |
451 |
Q |
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| T |
20694135 |
ggttgcaagggatagagcagatgaagtgcattttggctacaatgaagatgaatttgacgcagatgaagttctacagatggctactatcaaag |
20694226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 20693587 - 20693523
Alignment:
| Q |
107 |
tcatttcatcaagattcttggatatctccaaggctactacaatatgatgaaactttgatatcaaa |
171 |
Q |
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| T |
20693587 |
tcatttcatcaagattctttgattcctccaaggctactgcaatatgttcatactttgatgtcaaa |
20693523 |
T |
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