View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21658_low_8 (Length: 434)

Name: NF21658_low_8
Description: NF21658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21658_low_8
NF21658_low_8
[»] chr3 (4 HSPs)
chr3 (14-414)||(47452298-47452707)
chr3 (14-123)||(11006353-11006462)
chr3 (19-123)||(11015921-11016025)
chr3 (19-115)||(11024933-11025029)
[»] chr4 (22 HSPs)
chr4 (15-122)||(7907904-7908011)
chr4 (14-124)||(7770981-7771091)
chr4 (19-120)||(7813061-7813162)
chr4 (19-123)||(7822547-7822651)
chr4 (21-121)||(48156825-48156925)
chr4 (21-124)||(7789666-7789769)
chr4 (19-122)||(7877299-7877402)
chr4 (19-120)||(7800218-7800319)
chr4 (14-124)||(7904609-7904719)
chr4 (20-120)||(45366618-45366718)
chr4 (20-122)||(49044626-49044728)
chr4 (14-91)||(7765231-7765308)
chr4 (20-123)||(33134223-33134326)
chr4 (14-85)||(45372448-45372519)
chr4 (20-115)||(48862827-48862922)
chr4 (20-114)||(48170986-48171080)
chr4 (19-124)||(7238116-7238221)
chr4 (20-85)||(49048996-49049061)
chr4 (21-87)||(48735713-48735779)
chr4 (19-85)||(50251204-50251270)
chr4 (21-90)||(48891020-48891089)
chr4 (19-115)||(50672106-50672202)
[»] chr8 (5 HSPs)
chr8 (19-94)||(12194908-12194983)
chr8 (19-94)||(12439336-12439411)
chr8 (14-94)||(12199914-12199994)
chr8 (14-94)||(12444342-12444422)
chr8 (13-86)||(15348477-15348550)
[»] chr5 (2 HSPs)
chr5 (20-79)||(29712866-29712925)
chr5 (27-76)||(29687676-29687725)
[»] chr1 (1 HSPs)
chr1 (21-85)||(24322078-24322142)
[»] chr6 (1 HSPs)
chr6 (20-90)||(21015387-21015457)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Original strand, 47452298 - 47452707
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaaga 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47452298 aggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattcaaga 47452397  T
Q  114 ggtagatacaagatctccgtctcaataagtct---tcctcctttaccaccgttctttgtcatcgttctggtcaacttgatttagttggtaggatgataat 210  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47452398 ggtagatacaagatctccgtctcaataagtcttcctcctcctttaccaccgttctttgtcatcgttctggtcaacttgatttagttggtaggatgataat 47452497  T
Q  211 gaacaacttgccattcatgaattgnnnnnnncctgagattcatgcaaatgaaggaattcagaatagcttcgcacat----atgagtatatgtagaaattc 306  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  47452498 gaacaacttgccattcatgaattgtttttttcctgagattcatgcaaatgaaggaattcagaatagcttcgcacatatgaatgagtatatgtagaaattc 47452597  T
Q  307 agaatggaaataactgtaaaagcatacttacactagctttgcatcaaagttccaaagcttggccatct-ttgaaattataaag-tcgcatgaacccttta 404  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  47452598 agaatggaaataactgtaaaagtatacttacactagctttgcatcaaagttccaaagcttggccatctgttgaaattataaagatcgcatgaacccttta 47452697  T
Q  405 attgggtttt 414  Q
    ||||||||||    
T  47452698 attgggtttt 47452707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 11006353 - 11006462
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaaga 113  Q
    |||| ||||||||||||  |||||||||||| |||  |||||||| |||| ||| |||||||||||||||||||||| ||| || || ||||||||| ||    
T  11006353 aggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatga 11006452  T
Q  114 ggtagataca 123  Q
    || |||||||    
T  11006453 ggcagataca 11006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 11015921 - 11016025
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtag 118  Q
    ||||||||||||  ||| |||||||| ||| ||| ||||| ||||  |||||||||||||| |||||||||| ||| || |||||||||||| |||| ||    
T  11015921 cagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcag 11016020  T
Q  119 ataca 123  Q
    |||||    
T  11016021 ataca 11016025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 11024933 - 11025029
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagagg 115  Q
    ||||||||||||  |||||||||||| ||| ||| ||||| ||||  |||||||||||||| |||||||||| ||| || || ||||||||| ||||    
T  11024933 cagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattcatgagg 11025029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 7908011 - 7907904
Alignment:
Q  15 ggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagag 114  Q
    ||||||||||||||||||||||||||||||  ||   ||||||| |||  |||||||||||||||||||||||  ||||||||||  ||||||||| |||    
T  7908011 ggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgag 7907912  T
Q  115 gtagatac 122  Q
    | ||||||    
T  7907911 gaagatac 7907904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 7771091 - 7770981
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaaga 113  Q
    |||| ||||||||||||||||||| |||||| ||| ||| ||||| | || ||||||||||||||||||||||| ||| || |||||||| | |||| ||    
T  7771091 aggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatga 7770992  T
Q  114 ggtagatacaa 124  Q
    || ||||||||    
T  7770991 ggcagatacaa 7770981  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 7813162 - 7813061
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtag 118  Q
    |||||||||||||||||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| ||| |||| ||    
T  7813162 cagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcag 7813063  T
Q  119 at 120  Q
    ||    
T  7813062 at 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 7822651 - 7822547
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtag 118  Q
    |||||||||||||||||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| | | |||| ||    
T  7822651 cagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatgatgaggcag 7822552  T
Q  119 ataca 123  Q
    |||||    
T  7822551 ataca 7822547  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 48156825 - 48156925
Alignment:
Q  21 gagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 120  Q
    ||||||||||||||||| |||||| ||| ||||||||| |||| ||||||||||||||| ||||  || ||||| || |||||||||||||| || ||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaattatcaattcaagtggcagat 48156924  T
Q  121 a 121  Q
    |    
T  48156925 a 48156925  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 7789769 - 7789666
Alignment:
Q  21 gagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 120  Q
    ||||||| ||||||||| |||||| ||| ||| ||||| | || ||||||||||||||||||||||| ||| || |||||||||| |||| |||| ||||    
T  7789769 gagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagat 7789670  T
Q  121 acaa 124  Q
    ||||    
T  7789669 acaa 7789666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 7877402 - 7877299
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtag 118  Q
    ||||||||||||||||||||  |||| ||||||| ||||| |||| ||||||||||||| ||||||  | |||||| ||||| ||||||||| |||| ||    
T  7877402 cagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaag 7877303  T
Q  119 atac 122  Q
    ||||    
T  7877302 atac 7877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 7800319 - 7800218
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtag 118  Q
    |||||| ||||||||||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| ||| |||| ||    
T  7800319 cagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcag 7800220  T
Q  119 at 120  Q
    ||    
T  7800219 at 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 7904719 - 7904609
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaaga 113  Q
    |||| |||||||||||||||||||| ||||| |||  || ||||| |||| |||||||||||| ||||||| || || ||| || || ||||||||| ||    
T  7904719 aggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattcacga 7904620  T
Q  114 ggtagatacaa 124  Q
    || ||||||||    
T  7904619 ggaagatacaa 7904609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 45366618 - 45366718
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtaga 119  Q
    ||||||||||||||||||  ||||| ||| ||||||||| |||| |||||||||||| || ||||| |  ||||| ||||| ||||||||| |||| |||    
T  45366618 agagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaaga 45366717  T
Q  120 t 120  Q
    |    
T  45366718 t 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 49044626 - 49044728
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtaga 119  Q
    ||||||||||||||||||| ||||| |||  |||||||| |||| ||||||| |||| |||||||||| ||| ||  |||| ||||| ||| |||| |||    
T  49044626 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcaga 49044725  T
Q  120 tac 122  Q
    |||    
T  49044726 tac 49044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 7765308 - 7765231
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacag 91  Q
    |||| ||||||||| |||||||||| ||||| |||||||||||||   ||  |||||||||||||| |||||||||||    
T  7765308 aggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacag 7765231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 33134223 - 33134326
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtaga 119  Q
    ||||||||||||||| || | |||| ||| ||| ||||| || | ||||||||||||||| || |||||||| ||  |||| ||||||||| |||| |||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcaga 33134322  T
Q  120 taca 123  Q
    ||||    
T  33134323 taca 33134326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 45372448 - 45372519
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 85  Q
    |||| ||||||||| ||||||||| |||||| |||  || ||||| |||| |||||||||||||||||||||    
T  45372448 aggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacct 45372519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 48862922 - 48862827
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagagg 115  Q
    |||||||||||||||||| |||||  ||| ||| ||||| || | ||||||||||||||| ||||| | ||||||  |||| ||||||||| ||||    
T  48862922 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgagg 48862827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 48170986 - 48171080
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagag 114  Q
    ||||||||||| |||||| |||||| |||  || ||||| |||| ||||||||||||||  ||||||| ||| || || | ||||||||||||||    
T  48170986 agagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattcaagag 48171080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 7238116 - 7238221
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtag 118  Q
    ||||||||||||||||||| |||||| |||  || ||||| |  | |||||||||||| |||||||||| ||| || ||||| || | |||| |||| ||    
T  7238116 cagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttggatgattagttcatgaggcag 7238215  T
Q  119 atacaa 124  Q
    ||||||    
T  7238216 atacaa 7238221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 49048996 - 49049061
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 85  Q
    ||||||||||||||||||| ||||| |||  |||||||| |||| ||||||| ||||| |||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacct 49049061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 48735713 - 48735779
Alignment:
Q  21 gagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctca 87  Q
    ||||||||||||||||| |||||| |||  || ||||| || | ||||||||||||||| |||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctca 48735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 50251204 - 50251270
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 85  Q
    ||||||||||||||||||| ||||||||||  ||||| ||  ||| ||||| |||||| ||||||||    
T  50251204 cagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaacct 50251270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 48891089 - 48891020
Alignment:
Q  21 gagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaaca 90  Q
    |||| |||||||||||| |||||| ||| ||| ||||| |||| ||||||||| ||||  ||||||||||    
T  48891089 gagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctcaaca 48891020  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 50672202 - 50672106
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagagg 115  Q
    ||||||| ||||||| ||||||||||||||  |||||||| | | ||||| |||| || |  ||||| | || ||||| |||||||||||| |||||    
T  50672202 cagagatgagagaaagccatgacttagaaacacacttgaaacatgcaagacacttgactgataaccttagcaagatctcgattatcaattcgagagg 50672106  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 12194983 - 12194908
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 94  Q
    ||||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||||||||||||||| ||||||    
T  12194983 cagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12194908  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 12439411 - 12439336
Alignment:
Q  19 cagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 94  Q
    ||||||||||||| |||||||||||| ||||||| ||||| | || ||||||||||||||||||||||| ||||||    
T  12439411 cagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12439336  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 12199994 - 12199914
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 94  Q
    |||| |||||||||||||||||||||||||| |||  || ||||| | || ||||||||||||||||||||||| ||||||    
T  12199994 aggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12199914  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 12444422 - 12444342
Alignment:
Q  14 aggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 94  Q
    |||| |||||||||||||||||||||||||| |||  || ||||| | || ||||||||||||||||||||||| ||||||    
T  12444422 aggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12444342  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 15348550 - 15348477
Alignment:
Q  13 aaggagcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctc 86  Q
    ||||| ||||||||||||||||||| |||||| ||| ||| ||||| |||| ||||||||||||||| ||||||    
T  15348550 aaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctc 15348477  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 29712866 - 29712925
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 79  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 29687725 - 29687676
Alignment:
Q  27 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcac 76  Q
    ||||||||||| |||||| |||  ||||||||||||| ||||||||||||    
T  29687725 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 29687676  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 24322142 - 24322078
Alignment:
Q  21 gagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 85  Q
    ||||||||||||||||| |||||| ||| ||| ||||| || | ||||||||||||| |||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacct 24322078  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 21015457 - 21015387
Alignment:
Q  20 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaaca 90  Q
    |||||||||||||||| || ||||| |||  |||||||| |||| ||||||| | ||||| ||||||||||    
T  21015457 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaaca 21015387  T

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