View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21659_high_12 (Length: 236)

Name: NF21659_high_12
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21659_high_12
NF21659_high_12
[»] chr6 (40 HSPs)
chr6 (1-235)||(12163521-12163755)
chr6 (1-232)||(12163365-12163596)
chr6 (6-205)||(12163203-12163402)
chr6 (81-235)||(12163680-12163834)
chr6 (33-199)||(12164229-12164395)
chr6 (1-115)||(12210684-12210798)
chr6 (131-236)||(12163331-12163436)
chr6 (56-235)||(12210723-12210902)
chr6 (32-118)||(12164211-12164297)
chr6 (9-107)||(12163361-12163459)
chr6 (32-118)||(12163953-12164039)
chr6 (66-199)||(12163971-12164104)
chr6 (32-107)||(12210752-12210827)
chr6 (132-226)||(12163311-12163405)
chr6 (32-139)||(12163170-12163277)
chr6 (131-206)||(12163301-12163376)
chr6 (32-107)||(12163709-12163784)
chr6 (161-235)||(12163392-12163466)
chr6 (162-235)||(12164322-12164395)
chr6 (185-235)||(12210903-12210953)
chr6 (1-40)||(12163971-12164010)
chr6 (66-199)||(12211017-12211147)
chr6 (78-172)||(12219148-12219245)
chr6 (1-47)||(12163301-12163347)
chr6 (131-205)||(12210693-12210767)
chr6 (138-232)||(12210696-12210790)
chr6 (26-76)||(12210903-12210953)
chr6 (159-196)||(12210912-12210949)
chr6 (1-97)||(12163341-12163437)
chr6 (18-90)||(12163696-12163768)
chr6 (162-206)||(12211106-12211150)
chr6 (161-220)||(12163218-12163277)
chr6 (162-217)||(12164052-12164107)
chr6 (155-202)||(12179191-12179238)
chr6 (69-154)||(12218992-12219080)
chr6 (191-236)||(12163739-12163784)
chr6 (162-199)||(12163863-12163900)
chr6 (191-236)||(12163994-12164039)
chr6 (191-235)||(12164253-12164297)
chr6 (144-199)||(12179161-12179219)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12163755 - 12163521
Alignment:
Q  1 ctgggggaggaggtgacttgtacatgtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgg 100  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12163755 ctgggggaggaggtgacttatacttgtaaactggtggtggaggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggtggtgg 12163656  T
Q  101 gggagatgggtatttatatggctttttaggtggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtgga 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12163655 gggagatgggtatttatatggcttttttggtggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtgga 12163556  T
Q  201 ggagatttatacttgtaaaccggtggaggaggtga 235  Q
    |||||||| |||||||| |||||||| ||||||||    
T  12163555 ggagatttgtacttgtacaccggtggtggaggtga 12163521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12163596 - 12163365
Alignment:
Q  1 ctgggggaggaggtgacttgtacatgtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgg 100  Q
    |||| |||||||| || || ||| |||||||||||||||| |||||||| |||||||| || || || |||||||||||||||||||||| ||| |||||    
T  12163596 ctggtggaggaggggatttatacttgtaaactggtggtggaggagatttgtacttgtacaccggtggtggaggtgatttgtacttgtaaactggcggtgg 12163497  T
Q  101 gggagatgggtatttatatggctttttaggtggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtgga 200  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||    
T  12163496 tggagatgggtatttatatggcttcttaggtggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtacaccggtggagga 12163397  T
Q  201 ggagatttatacttgtaaaccggtggaggagg 232  Q
    || ||||| ||||||||||| ||||| |||||    
T  12163396 ggtgatttgtacttgtaaactggtggtggagg 12163365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 12163402 - 12163203
Alignment:
Q  6 ggaggaggtgacttgtacatgtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggag 105  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||    
T  12163402 ggaggaggtgatttgtacttgtaaactggtggtggaggagatttatacttgtaaactggtggaggaggtgacttgtacttgtaaactggtggtggtggag 12163303  T
Q  106 atgggtatttatatggctttttaggtggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggaga 205  Q
    |||| |||||||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  12163302 atggatatttatatggcttcttcggtggtggaggaggagacttatacttatacactggtggaggaggtgatttgtacttgtaaactggaggtggaggaga 12163203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 12163834 - 12163680
Alignment:
Q  81 tacttgtaaattggtggtgggggagatgggtatttatatggctttttaggtggtggtggaggagacttgtacttgtacactggtggaggaggggatttat 180  Q
    |||||||||| ||||||||| || ||||| || || ||||| || || ||||||||||| ||||| ||||||||||| ||||| |||||||| || ||||    
T  12163834 tacttgtaaactggtggtggtggtgatggatacttgtatggtttcttgggtggtggtggtggagatttgtacttgtaaactgggggaggaggtgacttat 12163735  T
Q  181 acttgtaaactggtggtggaggagatttatacttgtaaaccggtggaggaggtga 235  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  12163734 acttgtaaactggtggtggaggagatttatacttgtaaactggaggaggaggtga 12163680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 12164395 - 12164229
Alignment:
Q  33 ggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttatatggctttttaggtg 132  Q
    ||||| || ||||||||||||||||||||||| |||||||| || || || |||||||  |||||||| || |||||||| || ||||| || || ||||    
T  12164395 ggtggaggaggagatttatacttgtaaactggtggaggaggggacttatatttgtaaacgggtggtggtggtgatgggtacttgtatggtttcttgggtg 12164296  T
Q  133 gtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtgg 199  Q
    ||||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||    
T  12164295 gtggtggtggagatttgtacttgtaaactggaggaggaggtgatttgtacttgtaaactggcggtgg 12164229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 12210798 - 12210684
Alignment:
Q  1 ctgggggaggaggtgacttgtacatgtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || || ||||||||||||||||||||||| | |||||||||    
T  12210798 ctgggggaggaggtgacttgtacttgtaaactggtggtgggggagattgatacttatataccggtggaggaggtgatttgtacttgtatactggtggtgg 12210699  T
Q  101 gggagatgggtattt 115  Q
     ||||| ||||||||    
T  12210698 aggagaagggtattt 12210684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 12163436 - 12163331
Alignment:
Q  131 tggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgtaaaccggtggagga 230  Q
    |||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12163436 tggtggaggaggggatttatacttgtacaccggtggaggaggtgatttgtacttgtaaactggtggtggaggagatttatacttgtaaactggtggagga 12163337  T
Q  231 ggtgac 236  Q
    ||||||    
T  12163336 ggtgac 12163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 12210902 - 12210723
Alignment:
Q  56 gtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttatatggctttttaggtggtggtggaggagacttgtacttg 155  Q
    |||||| || |||||||| || || |||||||||| ||||||||| || ||||  || || ||||| || || |||||||| || ||||| |||||||||    
T  12210902 gtaaacaggtggaggaggagacttatacttgtaaactggtggtggtggtgatgaatacttgtatggtttcttgggtggtgggggtggagatttgtacttg 12210803  T
Q  156 tacactggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgtaaaccggtggaggaggtga 235  Q
    || ||||| |||||||| || || |||||||||||||||||||| ||||||| |||||| || |||||||||||||||||    
T  12210802 taaactgggggaggaggtgacttgtacttgtaaactggtggtgggggagattgatacttatataccggtggaggaggtga 12210723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 12164297 - 12164211
Alignment:
Q  32 tggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttata 118  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||| |||||    
T  12164297 tggtggtggtggagatttgtacttgtaaactggaggaggaggtgatttgtacttgtaaactggcggtggtggtgatgggtacttata 12164211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 12163459 - 12163361
Alignment:
Q  9 ggaggtgacttgtacatgtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagat 107  Q
    ||||| ||||||||| |||| |||||||| || || |||||||||||||| || || ||||||||||||||||||||||||| ||||||||| ||||||    
T  12163459 ggaggagacttgtacttgtacactggtggaggaggggatttatacttgtacaccggtggaggaggtgatttgtacttgtaaactggtggtggaggagat 12163361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 12164039 - 12163953
Alignment:
Q  32 tggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttata 118  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| || |||||||| |||||    
T  12164039 tggtggtggtggagatttgtacttgtaaactgggggaggaggtgacttgtacttgtaaactggtggtggtggtgatgggtacttata 12163953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 12164104 - 12163971
Alignment:
Q  66 ggaggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttatatggctttttaggtggtggtggaggagacttgtacttgtacactggtg 165  Q
    |||||||| || || || ||||||| ||||||||| || ||||| || || ||||| || || ||||||||||| ||||| ||||||||||| ||||| |    
T  12164104 ggaggaggggacttatatttgtaaactggtggtggtggtgatggatacttgtatggtttcttgggtggtggtggtggagatttgtacttgtaaactgggg 12164005  T
Q  166 gaggaggggatttatacttgtaaactggtggtgg 199  Q
    ||||||| || || ||||||||||||||||||||    
T  12164004 gaggaggtgacttgtacttgtaaactggtggtgg 12163971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 12210827 - 12210752
Alignment:
Q  32 tggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagat 107  Q
    |||||| || |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  12210827 tggtgggggtggagatttgtacttgtaaactgggggaggaggtgacttgtacttgtaaactggtggtgggggagat 12210752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 12163405 - 12163311
Alignment:
Q  132 ggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgtaaaccggtgg 226  Q
    ||||| ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| || || ||||||||||| |||||    
T  12163405 ggtggaggaggtgatttgtacttgtaaactggtggtggaggagatttatacttgtaaactggtggaggaggtgacttgtacttgtaaactggtgg 12163311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 12163277 - 12163170
Alignment:
Q  32 tggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttatatggctttttaggt 131  Q
    |||||| || ||||| |||||||| || ||||| ||||||||||||||||||||||||| ||| ||||| ||||| | |||||| |||||||| || ||     
T  12163277 tggtggaggaggagacttatacttatacactggtggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctttgga 12163178  T
Q  132 ggtggtgg 139  Q
    ||||||||    
T  12163177 ggtggtgg 12163170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 12163376 - 12163301
Alignment:
Q  131 tggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggagat 206  Q
    ||||||||||||||| || |||||||| |||||||||||||| || || |||||||||||||||||||| ||||||    
T  12163376 tggtggtggaggagatttatacttgtaaactggtggaggaggtgacttgtacttgtaaactggtggtggtggagat 12163301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 12163784 - 12163709
Alignment:
Q  32 tggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtggtgggggagat 107  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||| || |||||||||| ||||||||| ||||||    
T  12163784 tggtggtggtggagatttgtacttgtaaactgggggaggaggtgacttatacttgtaaactggtggtggaggagat 12163709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 12163466 - 12163392
Alignment:
Q  161 tggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgtaaaccggtggaggaggtga 235  Q
    |||||| ||||| || || |||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||    
T  12163466 tggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtacaccggtggaggaggtga 12163392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 12164395 - 12164322
Alignment:
Q  162 ggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgtaaaccggtggaggaggtga 235  Q
    ||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| || |||||    
T  12164395 ggtggaggaggagatttatacttgtaaactggtggaggaggggacttatatttgtaaacgggtggtggtggtga 12164322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 12210953 - 12210903
Alignment:
Q  185 gtaaactggtggtggaggagatttatacttgtaaaccggtggaggaggtga 235  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  12210953 gtaaactggtggaggaggagatttatacttgtaaactggtggaggtggtga 12210903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12164010 - 12163971
Alignment:
Q  1 ctgggggaggaggtgacttgtacatgtaaactggtggtgg 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  12164010 ctgggggaggaggtgacttgtacttgtaaactggtggtgg 12163971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 12211147 - 12211017
Alignment:
Q  66 ggaggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttatatggctttttaggtggtggtggaggagacttgtacttgtacactggtg 165  Q
    |||||||| ||||| |||||||||| ||| ||||| ||||||||||| || ||||| || || || ||||| || |||||   |||||||||    || |    
T  12211147 ggaggaggagatttatacttgtaaactgggggtggtggagatgggtacttgtatggtttctttggaggtggagggggagatgagtacttgta---aggag 12211051  T
Q  166 gaggaggggatttatacttgtaaactggtggtgg 199  Q
    ||||||| || ||||||||||| |||||||||||    
T  12211050 gaggaggtgacttatacttgtagactggtggtgg 12211017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 12219245 - 12219148
Alignment:
Q  78 ttgtacttgtaaattggtggtgggggagatgggtatttatatggctttttaggtggtggtg---gaggagacttgtacttgtacactggtggaggagg 172  Q
    ||||||||||||| ||||||||| || ||||| ||||| || | ||| || |||| |||||   ||||||||||||||||||| |||||||| |||||    
T  12219245 ttgtacttgtaaactggtggtggaggtgatggatatttgtaggtcttctttggtgatggtgacggaggagacttgtacttgtaaactggtggtggagg 12219148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12163347 - 12163301
Alignment:
Q  1 ctgggggaggaggtgacttgtacatgtaaactggtggtgggggagat 47  Q
    |||| |||||||||||||||||| |||||||||||||||| ||||||    
T  12163347 ctggtggaggaggtgacttgtacttgtaaactggtggtggtggagat 12163301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 12210767 - 12210693
Alignment:
Q  131 tggtggtggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggaga 205  Q
    ||||||||| ||||| |  ||||| || || ||||||||||| ||||| |||||||| |||||||||||||||||    
T  12210767 tggtggtgggggagattgatacttatataccggtggaggaggtgatttgtacttgtatactggtggtggaggaga 12210693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 12210790 - 12210696
Alignment:
Q  138 ggaggagacttgtacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgtaaaccggtggaggagg 232  Q
    ||||| |||||||||||||| |||||||| || || |||| |||||| || || ||||| ||||| ||||| |||||||| || ||||| |||||    
T  12210790 ggaggtgacttgtacttgtaaactggtggtgggggagattgatacttatataccggtggaggaggtgatttgtacttgtatactggtggtggagg 12210696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 12210953 - 12210903
Alignment:
Q  26 gtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtga 76  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| |||||    
T  12210953 gtaaactggtggaggaggagatttatacttgtaaactggtggaggtggtga 12210903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 12210949 - 12210912
Alignment:
Q  159 actggtggaggaggggatttatacttgtaaactggtgg 196  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12210949 actggtggaggaggagatttatacttgtaaactggtgg 12210912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 12163437 - 12163341
Alignment:
Q  1 ctgggggaggaggtgacttgtacatgtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaattggtgg 97  Q
    |||| |||||||| || || ||| |||| || ||||| || || ||||| |||||||||||||| || ||||| ||||| |||||||||| ||||||    
T  12163437 ctggtggaggaggggatttatacttgtacaccggtggaggaggtgatttgtacttgtaaactggtggtggaggagatttatacttgtaaactggtgg 12163341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 12163768 - 12163696
Alignment:
Q  18 ttgtacatgtaaactggtggtgggggagatttatacttgtaaactggaggaggaggtgatttgtacttgtaaa 90  Q
    |||||| |||||||||| || || || || ||||||||||||||||| || ||||| ||||| ||||||||||    
T  12163768 ttgtacttgtaaactgggggaggaggtgacttatacttgtaaactggtggtggaggagatttatacttgtaaa 12163696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 12211150 - 12211106
Alignment:
Q  162 ggtggaggaggggatttatacttgtaaactggtggtggaggagat 206  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||    
T  12211150 ggtggaggaggagatttatacttgtaaactgggggtggtggagat 12211106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 12163277 - 12163218
Alignment:
Q  161 tggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgtaaac 220  Q
    |||||||||||| || |||||||| || |||||||| ||||| ||||| |||||||||||    
T  12163277 tggtggaggaggagacttatacttatacactggtggaggaggtgatttgtacttgtaaac 12163218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 12164107 - 12164052
Alignment:
Q  162 ggtggaggaggggatttatacttgtaaactggtggtggaggagatttatacttgta 217  Q
    |||||||||||||| ||||| ||||||||||||||||| || |||  |||||||||    
T  12164107 ggtggaggaggggacttatatttgtaaactggtggtggtggtgatggatacttgta 12164052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 12179238 - 12179191
Alignment:
Q  155 gtacactggtggaggaggggatttatacttgtaaactggtggtggagg 202  Q
    |||||| |||||||| ||||| || |||||||||||||||||||||||    
T  12179238 gtacacgggtggaggtggggacttgtacttgtaaactggtggtggagg 12179191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 12219080 - 12218992
Alignment:
Q  69 ggaggtgatttgtacttgtaaattggtggtgggggagatgggtatttatatggctttttaggt---ggtggtggaggagacttgtactt 154  Q
    |||||||| |||||| | || ||||||||||| || ||||| ||||| || ||||| || |||   |||||||||||||||||||||||    
T  12219080 ggaggtgacttgtacatatatattggtggtggaggtgatggatatttgtagggcttctttggtagcggtggtggaggagacttgtactt 12218992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 12163784 - 12163739
Alignment:
Q  191 tggtggtggaggagatttatacttgtaaaccggtggaggaggtgac 236  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||    
T  12163784 tggtggtggtggagatttgtacttgtaaactgggggaggaggtgac 12163739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 12163900 - 12163863
Alignment:
Q  162 ggtggaggaggggatttatacttgtaaactggtggtgg 199  Q
    ||||||||||| || |||||||||||||||||||||||    
T  12163900 ggtggaggaggagacttatacttgtaaactggtggtgg 12163863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 12164039 - 12163994
Alignment:
Q  191 tggtggtggaggagatttatacttgtaaaccggtggaggaggtgac 236  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||    
T  12164039 tggtggtggtggagatttgtacttgtaaactgggggaggaggtgac 12163994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 12164297 - 12164253
Alignment:
Q  191 tggtggtggaggagatttatacttgtaaaccggtggaggaggtga 235  Q
    ||||||||| |||||||| ||||||||||| || |||||||||||    
T  12164297 tggtggtggtggagatttgtacttgtaaactggaggaggaggtga 12164253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 12179219 - 12179161
Alignment:
Q  144 gacttgtacttgtacactggtggaggagg---ggatttatacttgtaaactggtggtgg 199  Q
    |||||||||||||| |||||||| |||||   ||| || ||||||||||||||||||||    
T  12179219 gacttgtacttgtaaactggtggtggaggtggggacttgtacttgtaaactggtggtgg 12179161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University