View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21659_high_13 (Length: 231)
Name: NF21659_high_13
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21659_high_13 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 36127786 - 36127869
Alignment:
| Q |
148 |
tgtggtggtggccattgaaattccggagcatttcaaggatgcagataaactgtgcttttaaaaatcggatatatatcttatctg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36127786 |
tgtggtggtggccattgaaattccggagcatttcaaggatgcagataaactgtgcttttaaaaatcggatatatatcttatctg |
36127869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 36128833 - 36128761
Alignment:
| Q |
28 |
tagcaaggaacgaagttcgtgttcattcgtagtaggtgtttaaacttgt---aagggagaaagttcaaatccg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
36128833 |
tagcaaggaacgaagttcgtgttcattcgtagtaagtgtttaaacttgtaacaagggaggaagttcaaatccg |
36128761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 36127942 - 36127884
Alignment:
| Q |
95 |
ccggtgattaacaaaaataaaaata--gttaggagagtgtaattaaagaaggaggtgtg |
151 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
36127942 |
ccggtgattaacaaaaataaaaatacagttaggagagtgtaattaaagaaggaagtgtg |
36127884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36786495 - 36786464
Alignment:
| Q |
1 |
aggtcttataattagggacggaggaagtagca |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36786495 |
aggtcttataattagggacggaggaagtagca |
36786464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 26058573 - 26058545
Alignment:
| Q |
2 |
ggtcttataattagggacggaggaagtag |
30 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26058573 |
ggtcttataattagggacggaggaagtag |
26058545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University