View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21659_high_8 (Length: 370)

Name: NF21659_high_8
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21659_high_8
NF21659_high_8
[»] chr7 (6 HSPs)
chr7 (27-360)||(22007347-22007674)
chr7 (20-96)||(1262088-1262164)
chr7 (19-96)||(43071427-43071504)
chr7 (20-96)||(26910026-26910102)
chr7 (20-96)||(48849852-48849928)
chr7 (303-347)||(11649323-11649367)
[»] chr5 (8 HSPs)
chr5 (20-111)||(19085407-19085498)
chr5 (18-96)||(22009573-22009651)
chr5 (18-96)||(7473534-7473612)
chr5 (20-96)||(9043802-9043878)
chr5 (21-96)||(30442592-30442667)
chr5 (31-96)||(26841009-26841074)
chr5 (26-86)||(22004511-22004571)
chr5 (19-48)||(30463144-30463173)
[»] chr6 (7 HSPs)
chr6 (20-111)||(16246702-16246793)
chr6 (17-107)||(30908403-30908494)
chr6 (18-96)||(10092510-10092588)
chr6 (20-98)||(3065698-3065776)
chr6 (27-96)||(33045476-33045545)
chr6 (21-73)||(4660243-4660295)
chr6 (27-96)||(8976411-8976480)
[»] chr8 (7 HSPs)
chr8 (18-96)||(5657769-5657847)
chr8 (18-96)||(14678066-14678144)
chr8 (20-98)||(27541601-27541679)
chr8 (18-96)||(31100917-31100995)
chr8 (20-73)||(23738657-23738710)
chr8 (20-88)||(24788086-24788154)
chr8 (18-80)||(33689355-33689417)
[»] chr3 (12 HSPs)
chr3 (20-98)||(17681767-17681845)
chr3 (20-96)||(31685077-31685153)
chr3 (19-98)||(12538678-12538757)
chr3 (19-96)||(24815914-24815991)
chr3 (19-96)||(53973331-53973408)
chr3 (20-96)||(24761943-24762019)
chr3 (20-96)||(37982349-37982425)
chr3 (18-96)||(2549935-2550013)
chr3 (18-96)||(53352806-53352884)
chr3 (18-96)||(19882156-19882233)
chr3 (19-96)||(53027797-53027874)
chr3 (19-48)||(32015784-32015813)
[»] chr1 (2 HSPs)
chr1 (18-111)||(50990905-50990998)
chr1 (20-48)||(25223219-25223247)
[»] scaffold0035 (1 HSPs)
scaffold0035 (20-96)||(35063-35139)
[»] scaffold0096 (1 HSPs)
scaffold0096 (20-98)||(27410-27488)
[»] scaffold0045 (1 HSPs)
scaffold0045 (19-96)||(11679-11756)
[»] chr4 (3 HSPs)
chr4 (20-96)||(29863406-29863482)
chr4 (20-82)||(12506436-12506498)
chr4 (37-73)||(24260237-24260273)
[»] chr2 (5 HSPs)
chr2 (20-96)||(23349025-23349101)
chr2 (17-88)||(10328945-10329016)
chr2 (19-96)||(18355358-18355435)
chr2 (31-96)||(12741699-12741764)
chr2 (20-63)||(1615992-1616035)
[»] scaffold0596 (1 HSPs)
scaffold0596 (18-96)||(652-730)
[»] scaffold0157 (1 HSPs)
scaffold0157 (20-82)||(13979-14041)
[»] scaffold0475 (1 HSPs)
scaffold0475 (29-73)||(7541-7585)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 27 - 360
Target Start/End: Original strand, 22007347 - 22007674
Alignment:
Q  27 ttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaacattcttgaccgttggatggatctatgtta 126  Q
    ||||||||||| ||||||||||||  |||||||||| |||||||||||  ||||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaacattcttgactgttggatggatctatgtta 22007446  T
Q  127 atctccagacaatcaatttgttcccatttaatacgtctctttcagtttcaagtcacaattacactggtaacatacacacctatattcctattctcaataa 226  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||    
T  22007447 atctctagacaatcaatctgttcccaattaatacgtctctttcagtttcaagtcacagttgcattggtaacatacacacctagattcctattctcaataa 22007546  T
Q  227 acatctttccaccactttgtaaatcgcgattcttccacttcttcctgatctcctctcccgcttctacatttgtatctccacttcttcctctaggtttctt 326  Q
    |||||||||||||||| ||||||||||||||||||||||||||||   ||||  || |||||||||||| ||||||||||   |||| ||||||||||||    
T  22007547 acatctttccaccactctgtaaatcgcgattcttccacttcttcc---tctcggcttccgcttctacatctgtatctcca---cttcgtctaggtttctt 22007640  T
Q  327 cttctacatctatatacatatatgcccctctgtg 360  Q
    ||||||||| | || ||||||| |||||||||||    
T  22007641 cttctacatttgtacacatatacgcccctctgtg 22007674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 1262088 - 1262164
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||| |||||||    
T  1262088 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 1262164  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 43071504 - 43071427
Alignment:
Q  19 tatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  43071504 tatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 43071427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 26910102 - 26910026
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||| | |||| |||||||    
T  26910102 atcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaa 26910026  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 48849928 - 48849852
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||| ||||| |||||| |||||||    
T  48849928 atcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaa 48849852  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 11649367 - 11649323
Alignment:
Q  303 tccacttcttcctctaggtttcttcttctacatctatatacatat 347  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||    
T  11649367 tccacttcttcctctcgggttctgcttctacatctatatccatat 11649323  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 19085498 - 19085407
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaacattcttgaccgttg 111  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||    
T  19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaacattcttgactgttg 19085407  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 22009651 - 22009573
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||| ||||| |||||| |||||||    
T  22009651 atatcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaa 22009573  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 7473612 - 7473534
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  7473612 atatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 7473534  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 9043802 - 9043878
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  9043802 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 9043878  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 30442667 - 30442592
Alignment:
Q  21 tcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||| |||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 30442592  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 26841074 - 26841009
Alignment:
Q  31 atctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||  |||||| |||||||||||||||| ||||| |||||| |||||||    
T  26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa 26841009  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 22004571 - 22004511
Alignment:
Q  26 cttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttt 86  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||||| || |||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagttt 22004511  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 30463173 - 30463144
Alignment:
Q  19 tatcatacttatatctaatctttgttaaca 48  Q
    ||||||||||||||||||||||||||||||    
T  30463173 tatcatacttatatctaatctttgttaaca 30463144  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 16246702 - 16246793
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaacattcttgaccgttg 111  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||||||||||| | ||||| |||||| ||||||||||||||||| ||||    
T  16246702 atcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaacattcttgactgttg 16246793  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 30908494 - 30908403
Alignment:
Q  17 aatatcatactt-atatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaacattcttgacc 107  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||  ||||| |||||| ||||||||||||||||||    
T  30908494 aatatcatactttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaacattcttgacc 30908403  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 10092510 - 10092588
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||| |||||||    
T  10092510 atatcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaa 10092588  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 3065698 - 3065776
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaaca 98  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  3065698 atcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaaca 3065776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 33045545 - 33045476
Alignment:
Q  27 ttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||| |||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 33045476  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 4660295 - 4660243
Alignment:
Q  21 tcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaa 73  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaa 4660243  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 8976411 - 8976480
Alignment:
Q  27 ttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||| |||  |||||||||| ||||| |||||| ||||| |||||| |||||||    
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaa 8976480  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 5657769 - 5657847
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||| |||||||    
T  5657769 atatcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaa 5657847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 14678144 - 14678066
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||| |||||| |||||||    
T  14678144 atatcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaa 14678066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 27541679 - 27541601
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaaca 98  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| | |||| |||||||||    
T  27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaaca 27541601  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 31100995 - 31100917
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||| |||||| |||||||    
T  31100995 atatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaa 31100917  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 23738657 - 23738710
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaa 73  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  23738657 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaa 23738710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 24788154 - 24788086
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttg 88  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||| ||| ||||||||    
T  24788154 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttg 24788086  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 33689417 - 33689355
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaa 80  Q
    ||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||| ||||||    
T  33689417 atatcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaaccttaaa 33689355  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 17681767 - 17681845
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaaca 98  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||| |||||||||    
T  17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 17681845  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 31685077 - 31685153
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||| |||||| |||||||    
T  31685077 atcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 31685153  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 12538757 - 12538678
Alignment:
Q  19 tatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaaca 98  Q
    ||||||||||||||||||||||||||||| ||  |||||| |||||||||||||||| ||||| |||||| |||||||||    
T  12538757 tatcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 12538678  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 24815914 - 24815991
Alignment:
Q  19 tatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||| || ||||||||  ||||||||||||||||||||||| ||||| |||||| |||||||    
T  24815914 tatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 24815991  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 53973408 - 53973331
Alignment:
Q  19 tatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  53973408 tatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 53973331  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 24762019 - 24761943
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||| || ||||||||  ||||||||||||||||||||||| ||||| |||||| |||||||    
T  24762019 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 24761943  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 37982349 - 37982425
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  37982349 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 37982425  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 2549935 - 2550013
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||| |||||  ||||| |||||||    
T  2549935 atatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaa 2550013  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 53352884 - 53352806
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||| || ||||||||  |||||||||||||||| |||||| ||||  |||||| |||||||    
T  53352884 atatcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaa 53352806  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 19882233 - 19882156
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||| ||||||||||||||||||||||||  ||||||  ||| ||||||||||| ||||| |||||| |||||||    
T  19882233 atatcata-ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaa 19882156  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 53027874 - 53027797
Alignment:
Q  19 tatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||| || |||||| |  |||| ||||| |||||||||||| ||||| |||||| |||||||    
T  53027874 tatcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaa 53027797  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 32015813 - 32015784
Alignment:
Q  19 tatcatacttatatctaatctttgttaaca 48  Q
    ||||||||||||||||||||||||||||||    
T  32015813 tatcatacttatatctaatctttgttaaca 32015784  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 50990905 - 50990998
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaacattcttgaccgttg 111  Q
    ||||| |||||||||||||||||||||||||||  | || |||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||    
T  50990905 atatcttacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaacattcttgactgttg 50990998  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 25223219 - 25223247
Alignment:
Q  20 atcatacttatatctaatctttgttaaca 48  Q
    |||||||||||||||||||||||||||||    
T  25223219 atcatacttatatctaatctttgttaaca 25223247  T

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Target: scaffold0035 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 35063 - 35139
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||| |||||||    
T  35063 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 35139  T

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Target: scaffold0096 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 27410 - 27488
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaaca 98  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||||||||||| ||||| |||||| |||||||||    
T  27410 atcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 27488  T

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Target: scaffold0045 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 11756 - 11679
Alignment:
Q  19 tatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||| | |||||| |||||||    
T  11756 tatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaa 11679  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 29863482 - 29863406
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  | ||||||||||||||| ||||| ||||| |||||| |||||||    
T  29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaa 29863406  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12506436 - 12506498
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaata 82  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||    
T  12506436 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaata 12506498  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 24260237 - 24260273
Alignment:
Q  37 tctttgttaacattattaatgactttgcaaaccctaa 73  Q
    ||||||||||||||  |||||||||||||||||||||    
T  24260237 tctttgttaacattgctaatgactttgcaaaccctaa 24260273  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 23349101 - 23349025
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  23349101 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 23349025  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 10329016 - 10328945
Alignment:
Q  17 aatatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttg 88  Q
    ||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||| ||||| ||||||    
T  10329016 aatatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttg 10328945  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 18355435 - 18355358
Alignment:
Q  19 tatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    |||||||||||||| |||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  18355435 tatcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 18355358  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 12741699 - 12741764
Alignment:
Q  31 atctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 12741764  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 1616035 - 1615992
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttg 63  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||    
T  1616035 atcatccttatatccaatctttgttaacattgttaatgactttg 1615992  T

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Target: scaffold0596 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 652 - 730
Alignment:
Q  18 atatcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaatagttttgcctccaaa 96  Q
    ||||||||||||||||| |||||||||||||||  ||||||  ||||||||||||||| ||||| |||||| |||||||    
T  652 atatcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaa 730  T

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Target: scaffold0157 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 14041 - 13979
Alignment:
Q  20 atcatacttatatctaatctttgttaacattattaatgactttgcaaaccctaaacttaaata 82  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||    
T  14041 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaata 13979  T

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Target: scaffold0475 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 7585 - 7541
Alignment:
Q  29 atatctaatctttgttaacattattaatgactttgcaaaccctaa 73  Q
    |||| |||||||||||||||||  |||||||||||||||||||||    
T  7585 atatataatctttgttaacattgctaatgactttgcaaaccctaa 7541  T

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