View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21659_low_1 (Length: 526)
Name: NF21659_low_1
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21659_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 511
Target Start/End: Original strand, 3080419 - 3080919
Alignment:
| Q |
11 |
atcatcatattattttcactattgtgataataattaccaacatcaccataattattaaacacttgaaaactagtagaagctatggagaaataaagatttt |
110 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
3080419 |
atcatcatattattttcactattttgataataattaccaacatcaccataattgttaaacacttgaaaactagtagaaggtatggaggaataaagatttt |
3080518 |
T |
|
| Q |
111 |
gttgttgtaaatggttgttttgcttacaataagctaatagccattttaattgatctaactctttagaagacttatttatcatacctgcatacatatgaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3080519 |
gttgttgtaaatggttgttttgcttacaataagctaatagccattttaattgatctaactctttagaagacttatttatcatacctgcatacatatgaat |
3080618 |
T |
|
| Q |
211 |
aacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatttcg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3080619 |
aacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatttcg |
3080718 |
T |
|
| Q |
311 |
tttagtatcttctgtatgtttgaaacaccaaacaaacgatgagcattgccgaacatctttggttcatcggccggaaaataaggagctaaaacacactctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3080719 |
tttagtatcttctgtatgtttgaaacaccaaacaaacgatgagcattgccgaacatctttggttcatcggccggaaaataaggagctaaaacacactctc |
3080818 |
T |
|
| Q |
411 |
tagtgcactttcttctttgatacttgcatgctgcacaagccttgtttggtttgatgatattcataggaagaatgaatagggtttcagaaaaacgataaag |
510 |
Q |
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| T |
3080819 |
tagtgcactttcttctttgatacttgcatgctgcacaagccttgtttggtttgatgatattcataggaagaatgaatagggtttcagaaaaacgataaag |
3080918 |
T |
|
| Q |
511 |
g |
511 |
Q |
| |
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| |
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|
| T |
3080919 |
g |
3080919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 208 - 457
Target Start/End: Original strand, 324980 - 325228
Alignment:
| Q |
208 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatt |
307 |
Q |
| |
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||||| |||||||||||||||| ||||| | ||||||| |||| ||||||| |||||| || ||||||||||||||| | ||| | |||| | ||| |
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| T |
324980 |
aataagaccaagacatccatgacttgggtatcttgcacgcatttctgactcaaaaataatcgacttcattgcttcatctttatgatgatcatcatcaata |
325079 |
T |
|
| Q |
308 |
tcgtttagtatcttctgtatgtttgaaacaccaaacaaacgatgagcattgccgaacatctttggttcatcggccggaaaataaggagctaaaacacact |
407 |
Q |
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| T |
325080 |
gactttagcgtcttcaccatgttggaaataccaaacaaacgatgtgcattggcaagcat-tttggtttatcggctggaaaataaggagctaaagggcaat |
325178 |
T |
|
| Q |
408 |
ctctagtgcactttcttctttgatacttgcatgctgcacaagccttgttt |
457 |
Q |
| |
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|| ||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
325179 |
ctggagtacactttcttctttgatatttgcaggctgcacaagccttgttt |
325228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 205 - 474
Target Start/End: Complemental strand, 3104488 - 3104219
Alignment:
| Q |
205 |
atgaataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatcctta |
304 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| | ||||||||| | |||||||| ||||||||| | |||||| || ||||| | | || ||| |
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| T |
3104488 |
atgaataacaccaacacatccatgaacggggaattctgcacgaatatccgactcaaaaataattgaatccattgcatcggctcttacatcgttgtcttta |
3104389 |
T |
|
| Q |
305 |
atttcgtttagtatcttctgtatgtttgaaacaccaaacaaacgatgagcattgccgaacatctttggttcatcggccggaaaataaggagctaaaacac |
404 |
Q |
| |
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|| | ||||||| |||| |||||| ||||||||||||||| ||| ||||| | ||| | ||||||| ||| | ||||| |||||||||||| || |
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| T |
3104388 |
atattctttagtaacttcactatgttggaaacaccaaacaaattgtgaacattgtcaaacctttttggtttatcagttggaaagtaaggagctaaaggac |
3104289 |
T |
|
| Q |
405 |
actctctagtgcactttcttctttgatacttgcatgctgcacaagccttgtttggtttgatgatattcat |
474 |
Q |
| |
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| ||| | | |||||||| |||||||||||||||||||||||| | ||||||| ||| ||||||||||| |
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|
| T |
3104288 |
aatctttgggacactttctcctttgatacttgcatgctgcacaaactttgtttgatttcatgatattcat |
3104219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 454
Target Start/End: Original strand, 3093939 - 3094182
Alignment:
| Q |
208 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatt |
307 |
Q |
| |
|
||||||| ||||||||||| || ||||| | ||||| || | |||||||| |||||||||||||||||| |||||||| | | ||||||| | |
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| T |
3093939 |
aataacatcaagacatccaccaacagggaattgagcacgcatatccgactcaataataattgatttcattgcatcatctctatattct---tccttaact |
3094035 |
T |
|
| Q |
308 |
tcgtttagtatcttctgtatgtttgaaacaccaaacaaacgatgagcattgccgaacatctttggttcatcggccggaaaataaggagctaaaacacact |
407 |
Q |
| |
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| |||| ||||||| |||||| |||||||| |||||||||||||| |||||||||| | ||||| ||| || |||||||||||||||| || ||| | |
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| T |
3094036 |
tgctttaatatcttcgatatgttggaaacaccgaacaaacgatgagcgttgccgaacacttgtggtttatcagcaggaaaataaggagctagaagacaat |
3094135 |
T |
|
| Q |
408 |
ctctagtgcactttcttctttgatacttgcatgctgcacaagccttg |
454 |
Q |
| |
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|| | | |||||||||||||| | ||||| | ||||||||||||| |
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| T |
3094136 |
cttttgaacactttcttctttggaatttgcaagatgcacaagccttg |
3094182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 208 - 474
Target Start/End: Complemental strand, 36915244 - 36914978
Alignment:
| Q |
208 |
aataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaacaataattgatttcattgcttcatctctttgaccaccatccttaatt |
307 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||| | |||||||| ||| || ||| |||| || ||||| ||||| || ||||||| || |
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| T |
36915244 |
aataacaccaagacatccatgaacgggaaattttgcacgaatatccgactcaataattatggatctcatcgcaacatctttttgatcatcatccttgata |
36915145 |
T |
|
| Q |
308 |
tcgtttagtatcttctgtatgtttgaaacaccaaacaaacgatgagcattgccgaacatctttggttcatcggccggaaaataaggagctaaaacacact |
407 |
Q |
| |
|
|| ||||||||| | |||||||| ||||||||||||||||||||||| |||| |||||| ||||||| ||||||||| ||||||||||||||| ||||| |
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|
| T |
36915144 |
tcttttagtatcctttgtatgttggaaacaccaaacaaacgatgagcgttgctgaacatttttggtttatcggccgggaaataaggagctaaaggacact |
36915045 |
T |
|
| Q |
408 |
ctctagtgcactttcttctttgatacttgcatgctgcacaagccttgtttggtttgatgatattcat |
474 |
Q |
| |
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| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36915044 |
cacttgaacactttcttctttgatacttgcatgctgcacaagccttgtttggtttgatgatattcat |
36914978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 161 - 448
Target Start/End: Complemental strand, 41122232 - 41121945
Alignment:
| Q |
161 |
tgatctaactctttagaagacttatttatcatacctgcatacatatgaataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaa |
260 |
Q |
| |
|
||||||||||| | | |||||| |||| ||| ||| | ||||||||||||||||| ||||||||| | ||||| ||||||| || | |||||||| |
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|
| T |
41122232 |
tgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcagggaatcttgcacgcatatccgactcaa |
41122133 |
T |
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| Q |
261 |
caataattgatttcattgcttcatctctttgaccaccatccttaatttcgtttagtatcttctgtatgtttgaaacaccaaacaaacgatgagcattgcc |
360 |
Q |
| |
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|||||||||||||||||||||||| || || |||| | ||| | ||||| |||||| ||||| ||||||||||||||||||||||| ||| |
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|
| T |
41122132 |
agataattgatttcattgcttcatcttttagatgttcatcatcaatattctttagcatcttcaccatgttggaaacaccaaacaaacgatgagccttgta |
41122033 |
T |
|
| Q |
361 |
gaacatctttggttcatcggccggaaaataaggagctaaaacacactctctagtgcactttcttctttgatacttgcatgctgcacaa |
448 |
Q |
| |
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||| || | ||||| |||||| |||||||||||||||||| | || | || ||||||||||||||||| ||||||||||||||| |
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|
| T |
41122032 |
gaagatttctggtttatcggctggaaaataaggagctaaatcgcaacttggagaacactttcttctttgatatttgcatgctgcacaa |
41121945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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