View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21659_low_12 (Length: 249)
Name: NF21659_low_12
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21659_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 2483976 - 2484077
Alignment:
| Q |
17 |
atgtatatatggctcgtagtacatgtgagttgcatctccacttaggataataagagttttgttgggtttaatcatcgaacgagacccacaagataggaat |
116 |
Q |
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| T |
2483976 |
atgtatatatggctcatagtacatgtgagttgcatctccacttaggataataagagtttcgttgggtttaatcatcgaacgagacccacaagataggaat |
2484075 |
T |
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| Q |
117 |
ac |
118 |
Q |
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|| |
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| T |
2484076 |
ac |
2484077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 7340246 - 7340176
Alignment:
| Q |
48 |
gcatctccacttaggataataagagttttgttgggtttaatcatcgaacgagacccacaagataggaatac |
118 |
Q |
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| T |
7340246 |
gcatctccacttaggataataagagttttgttgggtttaatcatcgaacgagacccacaagataggaatac |
7340176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 7438991 - 7438889
Alignment:
| Q |
16 |
tatgtatatatggctcgtagtacatgtgagttgcatctccacttaggataataagagttttgttgggtttaatcatcgaacgagacccacaagataggaa |
115 |
Q |
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| T |
7438991 |
tatgtatatatggctcataggacatgtgagttgcatctctacttaggataataggagttttattgggtttaattattgaatgagacccacaagataggaa |
7438892 |
T |
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| Q |
116 |
tac |
118 |
Q |
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||| |
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| T |
7438891 |
tac |
7438889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 7340100 - 7340046
Alignment:
| Q |
194 |
gcaatgctagtttagtattgctagatgatttgactctcttgcagctgttagttaa |
248 |
Q |
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| T |
7340100 |
gcaatgctagtttagtattgctagatgatttgactctcttgcctctgttggttaa |
7340046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 2484155 - 2484196
Alignment:
| Q |
194 |
gcaatgctagtttagtattgctagatgatttgactctcttgc |
235 |
Q |
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| T |
2484155 |
gcaatgctagtttagtattgctagatgatttgactgtcttgc |
2484196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 2632072 - 2632139
Alignment:
| Q |
19 |
gtatatatggctcgtagtacatgtgagttgcatctccacttaggataataagagttttgttgggtttaat |
88 |
Q |
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| T |
2632072 |
gtatatatggctcatagtacaagtgagttgcatctccactcaggacaat--gagtttggtttggtttaat |
2632139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 2503789 - 2503844
Alignment:
| Q |
196 |
aatgctagttt--agtattgctagatgatttgactctcttgcagctgttagttaat |
249 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||| |
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| T |
2503789 |
aatgctagtttctagtattgctagatggtttgactctcttgcatctgttggttaat |
2503844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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