View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21659_low_16 (Length: 211)

Name: NF21659_low_16
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21659_low_16
NF21659_low_16
[»] chr6 (32 HSPs)
chr6 (49-192)||(12163872-12164015)
chr6 (49-192)||(12164130-12164273)
chr6 (49-182)||(12210918-12211051)
chr6 (130-192)||(12210741-12210803)
chr6 (130-192)||(12163638-12163700)
chr6 (130-192)||(12163290-12163352)
chr6 (100-192)||(12163668-12163760)
chr6 (49-116)||(12210867-12210937)
chr6 (50-99)||(12211171-12211220)
chr6 (52-99)||(12212842-12212889)
chr6 (49-92)||(12163824-12163867)
chr6 (49-119)||(12192338-12192411)
chr6 (49-92)||(12211122-12211165)
chr6 (49-99)||(12164079-12164129)
chr6 (49-99)||(12164367-12164417)
chr6 (49-99)||(12179410-12179460)
chr6 (49-99)||(12192491-12192541)
chr6 (141-182)||(12163361-12163402)
chr6 (130-179)||(12163479-12163528)
chr6 (49-98)||(12211323-12211372)
chr6 (133-192)||(12164313-12164372)
chr6 (52-99)||(12211224-12211271)
chr6 (52-99)||(12212893-12212940)
chr6 (142-188)||(12163203-12163249)
chr6 (148-182)||(12192329-12192363)
chr6 (136-182)||(12210687-12210733)
chr6 (49-99)||(12211272-12211322)
chr6 (49-98)||(12192266-12192315)
chr6 (148-193)||(12210858-12210903)
chr6 (133-182)||(12211098-12211147)
chr6 (58-99)||(12212797-12212838)
chr6 (100-188)||(12163509-12163597)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 12163872 - 12164015
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccaccatacaagtacaaatctccaccacctcctccttataagtacccatctcccc 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |    
T  12163872 gtttacaagtataagtctcctcctccacctgtctattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccac 12163971  T
Q  149 caccaccagtttacaagtacaagtcacctcctcccccagtttac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12163972 caccaccagtttacaagtacaagtcacctcctcccccagtttac 12164015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 12164130 - 12164273
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccaccatacaagtacaaatctccaccacctcctccttataagtacccatctcccc 148  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |    
T  12164130 gtttacaagtataagtctcctcctccacccgtcaattcaccacctccaccatataagtacaaatctccaccacctcctccttataagtacccatcaccac 12164229  T
Q  149 caccaccagtttacaagtacaagtcacctcctcccccagtttac 192  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||    
T  12164230 caccgccagtttacaagtacaaatcacctcctcctccagtttac 12164273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 12210918 - 12211051
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccaccatacaagtacaaatctccaccacctcctccttataagtacccatctcccc 148  Q
    |||||||||||||| |||||||||||||| || || |||||||||||||||||||||||   |||||||||||||||||| || |||||| |||| || |    
T  12210918 gtttacaagtataaatctcctcctccaccagtttactcaccacctccaccatacaagtattcatctccaccacctcctccgtacaagtactcatcaccac 12211017  T
Q  149 caccaccagtttacaagtacaagtcacctcctcc 182  Q
    |||||||||| |||||||| ||||||||||||||    
T  12211018 caccaccagtctacaagtataagtcacctcctcc 12211051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 12210741 - 12210803
Alignment:
Q  130 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttac 192  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12210741 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttac 12210803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 12163638 - 12163700
Alignment:
Q  130 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttac 192  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  12163638 tataaatacccatctcccccaccaccagtttacaagtacaaatcacctcctcctccagtttac 12163700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 12163290 - 12163352
Alignment:
Q  130 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttac 192  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  12163290 tataaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttac 12163352  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 12163668 - 12163760
Alignment:
Q  100 tacaagtacaaatctccaccacctcctccttataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttac 192  Q
    |||||||||||||| || || |||||   ||| |||||   |||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  12163668 tacaagtacaaatcacctcctcctccagtttacaagtataaatctcctccaccaccagtttacaagtataagtcacctcctcccccagtttac 12163760  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 12210867 - 12210937
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacca---tacaagtacaaatctcc 116  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||   |||||||| ||||||||    
T  12210867 gtttacaagtataagtctcctcctccacctgtttactcaccacctccaccagtttacaagtataaatctcc 12210937  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 12211171 - 12211220
Alignment:
Q  50 tttacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  12211171 tttacaagtataagtcacctcctccacctgtctactcaccacctccacca 12211220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 12212842 - 12212889
Alignment:
Q  52 tacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  12212842 tacaagtataagtctcctcccccacctgtctactcaccacctccacca 12212889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 12163824 - 12163867
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacc 92  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  12163824 gtttacaagtataagtctccccctccacctgtctactcaccacc 12163867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 12192338 - 12192411
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacca---tacaagtacaaatctccacc 119  Q
    ||||||||||| ||||| || |||||||||||||| |||||||||||||||   ||||||||||| || |||||    
T  12192338 gtttacaagtacaagtcaccccctccacctgtctactcaccacctccaccagtttacaagtacaagtccccacc 12192411  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 12211122 - 12211165
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacc 92  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  12211122 gtttacaagtataaatctcctcctccacctgtctactcaccacc 12211165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 12164079 - 12164129
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||| |||||||| |||||||||||||| || |||||||||||||||    
T  12164079 gtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 12164129  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 12164367 - 12164417
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||||||||| |||||||||||||||||  | |||||||||||||||    
T  12164367 gtttacaagtataaatctcctcctccacctgttcactcaccacctccacca 12164417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 12179410 - 12179460
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  12179410 gtttacaagtataagtctcctcctcctcctgcttactcaccacctccacca 12179460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 12192491 - 12192541
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  12192491 gtttacaagtataagtctcctcctcctcctgcatactcaccacctccacca 12192541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 12163361 - 12163402
Alignment:
Q  141 atctcccccaccaccagtttacaagtacaagtcacctcctcc 182  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  12163361 atctcctccaccaccagtttacaagtacaaatcacctcctcc 12163402  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 12163479 - 12163528
Alignment:
Q  130 tataagtacccatctcccccaccaccagtttacaagtacaagtcacctcc 179  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||    
T  12163479 tataaatacccatctccaccaccgccagtttacaagtacaaatcacctcc 12163528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 12211323 - 12211372
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacc 98  Q
    |||||||| |||||||| ||||| ||||||||||| ||||||||||||||    
T  12211323 gtttacaaatataagtcacctcccccacctgtctactcaccacctccacc 12211372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 12164313 - 12164372
Alignment:
Q  133 aagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttac 192  Q
    ||||||||||| || |||||||| |||||||| || ||||| |||||||| |||||||||    
T  12164313 aagtacccatcaccaccaccacccgtttacaaatataagtcccctcctccaccagtttac 12164372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 12211224 - 12211271
Alignment:
Q  52 tacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    ||||||||||| || || |||||||||||||| |||||||||||||||    
T  12211224 tacaagtataaatcaccccctccacctgtctactcaccacctccacca 12211271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 12212893 - 12212940
Alignment:
Q  52 tacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||||||||| |||||||||||||| |  |||||||||||||||    
T  12212893 tacaagtataagtcccctcctccacctgtttcctcaccacctccacca 12212940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 12163203 - 12163249
Alignment:
Q  142 tctcccccaccaccagtttacaagtacaagtcacctcctcccccagt 188  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| |||||    
T  12163203 tctcctccacctccagtttacaagtacaaatcacctcctccaccagt 12163249  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 12192329 - 12192363
Alignment:
Q  148 ccaccaccagtttacaagtacaagtcacctcctcc 182  Q
    ||||||||||||||||||||||||||||| |||||    
T  12192329 ccaccaccagtttacaagtacaagtcaccccctcc 12192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 12210687 - 12210733
Alignment:
Q  136 tacccatctcccccaccaccagtttacaagtacaagtcacctcctcc 182  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||||||||    
T  12210687 tacccttctcctccaccaccagtatacaagtacaaatcacctcctcc 12210733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 12211272 - 12211322
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||| |||||||| ||||| ||||||||||| |||||||| ||||||    
T  12211272 gtttacaaatataagtcacctcccccacctgtctactcaccaccaccacca 12211322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 12192266 - 12192315
Alignment:
Q  49 gtttacaagtataagtctcctcctccacctgtctattcaccacctccacc 98  Q
    |||||||||||||| || || || ||||||||||| ||||||||||||||    
T  12192266 gtttacaagtataaatcaccacccccacctgtctactcaccacctccacc 12192315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 12210858 - 12210903
Alignment:
Q  148 ccaccaccagtttacaagtacaagtcacctcctcccccagtttact 193  Q
    |||||||||||||||||||| ||||| |||||||| || |||||||    
T  12210858 ccaccaccagtttacaagtataagtctcctcctccacctgtttact 12210903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 12211098 - 12211147
Alignment:
Q  133 aagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcc 182  Q
    |||||||||||||| ||||| |||||||||||||| || || ||||||||    
T  12211098 aagtacccatctccaccacccccagtttacaagtataaatctcctcctcc 12211147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 12212797 - 12212838
Alignment:
Q  58 tataagtctcctcctccacctgtctattcaccacctccacca 99  Q
    |||||||| ||||| ||||||||||| |||||||||||||||    
T  12212797 tataagtcacctcccccacctgtctactcaccacctccacca 12212838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 12163509 - 12163597
Alignment:
Q  100 tacaagtacaaatctccaccacctcctccttataagtacccatctcccccaccaccagtttacaagtacaagtcacctcctcccccagt 188  Q
    |||||||||||||| || ||||| ||    || ||||||  |||||| |||||||||||||||||||| || || |||||||| |||||    
T  12163509 tacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccaccagtttacaagtataaatcccctcctccaccagt 12163597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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