View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21659_low_2 (Length: 522)
Name: NF21659_low_2
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21659_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Original strand, 17201044 - 17201512
Alignment:
| Q |
11 |
cacagacgggtgtggaacattctcaaaataagtactacgtcactaagaagtgctaatacaactccgttgaggagcactatcgggatgaggagcatgatga |
110 |
Q |
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| T |
17201044 |
cacagacgggtgtggaacattctcaaaacgagtactacgtcactaagaagcgctaatacaactctgttgaggagca------------------tgatga |
17201125 |
T |
|
| Q |
111 |
gtctcagcaacatgagcaacatggctctggctcaccaacagccccatcggcacctgattcttttttcgaggggccttctgatcagtcgcttctaccatca |
210 |
Q |
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|||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17201126 |
gtcttagccccatgagcaacatggctc------accaacagccccaccggcacctgattcttttttcgaggggccttctgatcagtcgcttctaccgtca |
17201219 |
T |
|
| Q |
211 |
tttggtaaacatgtcgcccacaagatttggagcaacgttggagtaagtacaactacacgaaccctcttcacaagttgtacttcaagatagtccttgggtg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17201220 |
tttggtaaacatgtcgcccacaagatttggagcaacgttggagtaagtacaac---acgaaccctcttcacaagttgtacttcaagatagtccttgggtg |
17201316 |
T |
|
| Q |
311 |
cctgcaaccaagacactccaacatactgatcagattagctgggatcacgaacacctaattttacttttagaaaacaaggagaaggtaaatctacatgcct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
17201317 |
cctgcaaccaagacactccaacatactgatcagattagctgggatcacgaacacctaatcttacttttagaaaacaaggtgaaggtaaatctacatgcct |
17201416 |
T |
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| Q |
411 |
acatatttcaccgtctatatgaaaacattaaggagtgcaagaagcacaagaagaagaatataccatatggaagattattgtttgagctcttctatc |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17201417 |
acatatttcaccgtctatatgaaaacattaaggagtgcaggaagcacaagaagaagaatataccatatggaagattattgtttaagctcttctatc |
17201512 |
T |
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