View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21659_low_3 (Length: 516)
Name: NF21659_low_3
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21659_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19390934 - 19391154
Alignment:
| Q |
1 |
cacttattttttgagtaatcaactactggtcctgttaagaacacgtaattgaagnnnnnnnn-gtattgattggttctatgtatttgtgtgcaattaagc |
99 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19390934 |
cacttattttttgagtaatcagctactggtcctgttaagaacacgtaattgaagtttttttttgtattgatcggttctatgtatttgtgtgcaattaagc |
19391033 |
T |
|
| Q |
100 |
caaaacttgcagcttgaagttcttattgtgtttatattatataacttgcatgaatttcccgtactcttatagaaatctaacttaagatttgtgagcctct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19391034 |
caaaacttgcagcttgaagttcttattgtgtttatattatataacttgcatgaatttcccgtactcttatagaaatctaacttaagatttgtgagcctct |
19391133 |
T |
|
| Q |
200 |
cttcattaattgaactaatga |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19391134 |
cttcattaattgaactaatga |
19391154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 233 - 373
Target Start/End: Complemental strand, 19390850 - 19390710
Alignment:
| Q |
233 |
gattggaccacatgaaaataagaggcaccgctccacnnnnnnnctttacaacactgatgatattttcttcattcataaaattaattgcatatatgataag |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19390850 |
gattggaccacatgaaaataagaggcaccgctccactttttttctttacaacactgatgatattttcttcattcataaaattaattgcatatatgataag |
19390751 |
T |
|
| Q |
333 |
tatagagacctattaatagggcatgcttgtagtatgttgga |
373 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19390750 |
tatagagacctattaatagggcatacttgtagtatgttgga |
19390710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 19390683 - 19390551
Alignment:
| Q |
367 |
tgttggaagcaattcattctcttcctcttggtaacttacgtgtgtgtgaaatttgtgttatctttatgtcccattgatatcagtagcaatataaagnnnn |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19390683 |
tgttggaagcaattcattctcttcctcttggtaacttacgtgtgtgtgaaatttgtgttatctttatgtcccattgatatcagtagcaatataaagaaaa |
19390584 |
T |
|
| Q |
467 |
nnntcgattagaaccaagtttagagctgagatg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19390583 |
aaatcgattagaaccaagtttagagctgagatg |
19390551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 15995324 - 15995375
Alignment:
| Q |
406 |
gtgtgtgtgaaatttgtgttatctttatgtcccattgatatcagtagcaata |
457 |
Q |
| |
|
|||| ||||| ||||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
15995324 |
gtgtatgtgagatttgtgttgtgtttatgtcccattaatatcagtagcaata |
15995375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University