View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21659_low_4 (Length: 505)
Name: NF21659_low_4
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21659_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Complemental strand, 17701570 - 17701091
Alignment:
| Q |
15 |
atcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaatatcatgat---actgaaattc |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
17701570 |
atcatgaagagttctttttcttcaccctatttccattttcatcattcaatcgatcacaaacccaaaaacaactatgaatatcatcatggtaatgaaattg |
17701471 |
T |
|
| Q |
112 |
agaaacaacaaggttcaaaccctaagttcaaaccctatagtttttctgtacactctcctgcgccaatcgctcacaacatcatgaacaaacactattcttc |
211 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17701470 |
agaaacaccaagattcaaaccctaagttcaaaccctatagtttttctgtacactctcctgagcaaatcactcacaacatcatgaacaaacactattcttc |
17701371 |
T |
|
| Q |
212 |
accttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttcaagaatc |
311 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17701370 |
accttcttctcaccattcgtttgataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttcaagaatc |
17701271 |
T |
|
| Q |
312 |
tacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttctctaagattcttgttcaacctgaaa |
411 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
17701270 |
tacagttgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcctcgaagattcttgttcaacctgaaa |
17701171 |
T |
|
| Q |
412 |
caaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttct |
491 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17701170 |
caaacaaacagatccatgatcatgatgtgaataacggcggcaccttgaagaagactataaaaattacttgtgttttttct |
17701091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Original strand, 17662519 - 17662988
Alignment:
| Q |
10 |
acatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaatatcatgat---actga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
17662519 |
acatcatcatgatgagttctttttcttcaccctatttccattttcatcattctattgatcacaaacccaaaaacaactatgaatatcatcatggtactga |
17662618 |
T |
|
| Q |
107 |
aattcagaaacaacaaggttcaaaccctaagttcaaaccctatagtttttct-gtacactctcctgcgccaatcgctcacaacatcatgaacaaacacta |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||| | ||||||||||||||||||||| ||| |
|
|
| T |
17662619 |
aattcagaaacaag----------------gttcaaaccctatagttttttttgtacactctcctgagccaaacactcacaacatcatgaacaaacccta |
17662702 |
T |
|
| Q |
206 |
ttcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttca |
305 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17662703 |
ttcttcaccttcttctcaccattcgtttcataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttca |
17662802 |
T |
|
| Q |
306 |
agaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttctctaagattcttgttcaac |
405 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17662803 |
agaatctacaattgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcctctaagattcttgttcaac |
17662902 |
T |
|
| Q |
406 |
ctgaaacaaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttct |
491 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17662903 |
ctgaaacaaacaaacagatccgtgatcatgatgtgaataacggcggcaccttgaagaagactacaaaaattacttgtgttttttct |
17662988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 22667820 - 22667771
Alignment:
| Q |
194 |
gaacaaacactattcttcaccttcttctcaccattcctttgataaaccca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
22667820 |
gaacaaacactattcttcaccttcttctcattattcgtttgataaaccca |
22667771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 22667110 - 22667050
Alignment:
| Q |
235 |
ataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaa |
295 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||| | ||||||||| ||||| |||||| |
|
|
| T |
22667110 |
ataaacccaacaacagccatgatcaagatcaccaagagactcttgaaactgatatgaaaaa |
22667050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University