View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21659_low_5 (Length: 492)

Name: NF21659_low_5
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21659_low_5
NF21659_low_5
[»] chr7 (5 HSPs)
chr7 (15-492)||(36126855-36127329)
chr7 (380-482)||(27571822-27571922)
chr7 (325-371)||(15050181-15050226)
chr7 (430-483)||(30182320-30182373)
chr7 (390-426)||(40422762-40422798)
[»] chr4 (4 HSPs)
chr4 (376-473)||(18596995-18597091)
chr4 (435-483)||(2206367-2206415)
chr4 (380-474)||(8330075-8330168)
chr4 (395-483)||(32818394-32818480)
[»] chr2 (1 HSPs)
chr2 (390-483)||(3476453-3476545)
[»] chr6 (3 HSPs)
chr6 (395-483)||(2234490-2234576)
chr6 (429-483)||(30926802-30926856)
chr6 (429-483)||(31305871-31305925)
[»] chr1 (2 HSPs)
chr1 (430-483)||(3515826-3515879)
chr1 (330-371)||(8130851-8130892)
[»] chr3 (2 HSPs)
chr3 (380-483)||(35058321-35058422)
chr3 (429-483)||(51285577-51285631)
[»] scaffold0361 (1 HSPs)
scaffold0361 (328-367)||(14268-14307)
[»] chr8 (3 HSPs)
chr8 (376-474)||(32056320-32056416)
chr8 (324-369)||(30251625-30251670)
chr8 (323-371)||(35495146-35495194)
[»] chr5 (2 HSPs)
chr5 (330-371)||(15368136-15368177)
chr5 (380-425)||(29922586-29922631)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Original strand, 36126855 - 36127329
Alignment:
Q  15 cacagacacacacacaattactaacaacgattaaataactaaaccttcgcaaaactaaaaccttcaccagtcataccatacctgcatttttgcatctcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||    
T  36126855 cacagacacacacacaattactaacaacgattaaataactaaac-----------------cttcaccagtcataccatacctgcatttttgcatctcaa 36126937  T
Q  115 aaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatcatgttgtacatatctgttctggcacaataatttttctgattctt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36126938 aaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatcatgttgtatatatctgttctggcacaataatttttctgattctt 36127037  T
Q  215 catccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactcctatcaaatatgaaaatac--------------aattgtattgttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||    
T  36127038 catccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactcctatcaaatatgaaaatacaatgcacaatgattaattgtattgttt 36127137  T
Q  301 aagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagagccaaaattgattctggaaacaagtttgattggtctcaagtaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127138 aagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagagccaaaattgattctggaaacaagtttgattggtctcaagtaaa 36127237  T
Q  401 attgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaactaccataa 492  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36127238 attgattttgcatcaagaattgattcctaactttaagctaaaaattgaagattttcattctagaattgattttagcactcaaactaccataa 36127329  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 482
Target Start/End: Original strand, 27571822 - 27571922
Alignment:
Q  380 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcact 479  Q
    ||||||||| |||| |||| |||||||||| | |||||||||||||  | |||| ||| || |||||| || |||| |||||||||||||||||  ||||    
T  27571822 gtttgattgctctcgagtataattgattttacctcaagaattgatt--ctacttgaagttagaaattggagcttttgattctagaattgattttaacact 27571919  T
Q  480 caa 482  Q
    |||    
T  27571920 caa 27571922  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 15050181 - 15050226
Alignment:
Q  325 ctaagtgtatgtttggttccacttcaggaagagccaaaattgattct 371  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||    
T  15050181 ctaagtgtatgtttggttccactt-tggaggagccaaaattgattct 15050226  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 30182373 - 30182320
Alignment:
Q  430 actttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    |||| ||||||||||||| || |||| ||||||||||| |||||| ||||||||    
T  30182373 acttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaa 30182320  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 40422762 - 40422798
Alignment:
Q  390 tctcaagtaaaattgattttgcatcaagaattgattc 426  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  40422762 tctcaagtagaattgattttgcctcaagaattgattc 40422798  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 18596995 - 18597091
Alignment:
Q  376 acaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttt 473  Q
    ||||||||||||  |||||||||||||||||||| | || |||||||||| | ||||| |||||| || |||||  |||| |||||| ||||||||||    
T  18596995 acaagtttgatttctctcaagtaaaattgattttacctccagaattgatt-ctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 2206415 - 2206367
Alignment:
Q  435 aagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    ||||||||||||| || |||| ||||||| |||||||||||||||||||    
T  2206415 aagctaaaaattggagcttttgattctaggattgatttttgcactcaaa 2206367  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 474
Target Start/End: Original strand, 8330075 - 8330168
Alignment:
Q  380 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgattttt 474  Q
    ||||| ||| |||||||||||||||||| ||| || | ||| |||||  ||||| |||||| |||||| || |||| |||||| |||||||||||    
T  8330075 gtttggttgctctcaagtaaaattgattctgcctccataatggattct-aacttgaagctagaaattggagcttttgattctataattgattttt 8330168  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 483
Target Start/End: Complemental strand, 32818480 - 32818394
Alignment:
Q  395 agtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    |||| |||||||||||| || |||||||||||   | || |||||| || ||| || |||| |||||||||||||||||||||| ||||    
T  32818480 agtagaattgattttgcctccagaattgattct--atttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaa 32818394  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 483
Target Start/End: Complemental strand, 3476545 - 3476453
Alignment:
Q  390 tctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    |||| ||||||||||||||||| || |||||||||| | ||||| ||||||||||||  || |||| ||||||||||| |||||| || |||||    
T  3476545 tctcgagtaaaattgattttgcctccagaattgatt-ctaacttaaagctaaaaattagagcttttgattctagaatttatttttacattcaaa 3476453  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 483
Target Start/End: Original strand, 2234490 - 2234576
Alignment:
Q  395 agtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    |||| |||||||||||| |  | |||||||||  ||||| |||||||||| ||||| |||| |||||||||||||||||  ||||||||    
T  2234490 agtagaattgattttgccttcaaaattgattc--aacttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaa 2234576  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 30926856 - 30926802
Alignment:
Q  429 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    ||||| |||||| |||||| || |||| |||||||||||||||||| ||||||||    
T  30926856 aacttgaagctagaaattggagttttttattctagaattgatttttacactcaaa 30926802  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 31305925 - 31305871
Alignment:
Q  429 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    ||||| ||||||||||||| || |||| |||||||||||||||| | ||||||||    
T  31305925 aacttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaa 31305871  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 483
Target Start/End: Original strand, 3515826 - 3515879
Alignment:
Q  430 actttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    |||| |||||| |||||| || ||||||||||||||||||||||| ||||||||    
T  3515826 acttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaa 3515879  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 8130851 - 8130892
Alignment:
Q  330 tgtatgtttggttccacttcaggaagagccaaaattgattct 371  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  8130851 tgtatgtttggttccacttctggaggagccaaaattgattct 8130892  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 483
Target Start/End: Original strand, 35058321 - 35058422
Alignment:
Q  380 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcact 479  Q
    ||||||| | |||| |||| |||||||||||| |||||||||||||  | ||||  ||||| |||||  || |||| |||||||||||||||||  ||||    
T  35058321 gtttgatggctctcgagtagaattgattttgcctcaagaattgatt--ctacttggagctagaaattcgagcttttgattctagaattgattttaacact 35058418  T
Q  480 caaa 483  Q
    ||||    
T  35058419 caaa 35058422  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 51285577 - 51285631
Alignment:
Q  429 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 483  Q
    ||||| |||||||||||   || |||| |||||||||||||||||||||||||||    
T  51285577 aacttgaagctaaaaatcacagcttttgattctagaattgatttttgcactcaaa 51285631  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 367
Target Start/End: Complemental strand, 14307 - 14268
Alignment:
Q  328 agtgtatgtttggttccacttcaggaagagccaaaattga 367  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  14307 agtgtatgtttggttccacttttggaagagccaaaattga 14268  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 32056320 - 32056416
Alignment:
Q  376 acaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgattttt 474  Q
    ||||||||| ||| |||  ||||||||||||||| | || | |||||||| | |||||||||||| |||||| || || | ||||||||||||||||||    
T  32056320 acaagtttggttgctctatagtaaaattgattttacctccataattgatt-ctaactttaagctagaaattggagcttct-attctagaattgattttt 32056416  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 30251625 - 30251670
Alignment:
Q  324 tctaagtgtatgtttggttccacttcaggaagagccaaaattgatt 369  Q
    ||||||||||||||||||||||| |  ||| |||||||||||||||    
T  30251625 tctaagtgtatgtttggttccacatttggaggagccaaaattgatt 30251670  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 35495146 - 35495194
Alignment:
Q  323 ttctaagtgtatgtttggttccacttcaggaagagccaaaattgattct 371  Q
    ||||||||||||||||||||||||||  |||  | ||||||||||||||    
T  35495146 ttctaagtgtatgtttggttccacttttggagcacccaaaattgattct 35495194  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 15368136 - 15368177
Alignment:
Q  330 tgtatgtttggttccacttcaggaagagccaaaattgattct 371  Q
    |||||||||||||||||||  ||| |||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattct 15368177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 29922586 - 29922631
Alignment:
Q  380 gtttgattggtctcaagtaaaattgattttgcatcaagaattgatt 425  Q
    ||||||||| |||| |||| |||||||||||| |||||||||||||    
T  29922586 gtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

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