View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21659_low_6 (Length: 462)

Name: NF21659_low_6
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21659_low_6
NF21659_low_6
[»] chr5 (2 HSPs)
chr5 (17-241)||(6171150-6171375)
chr5 (328-449)||(6171449-6171569)
[»] chr4 (3 HSPs)
chr4 (315-449)||(7986118-7986252)
chr4 (315-449)||(44856828-44856962)
chr4 (315-442)||(45072895-45073022)
[»] chr3 (3 HSPs)
chr3 (315-449)||(24828509-24828644)
chr3 (315-411)||(47498395-47498491)
chr3 (395-449)||(47498323-47498377)
[»] chr1 (2 HSPs)
chr1 (315-442)||(26537135-26537262)
chr1 (338-442)||(8399681-8399785)
[»] scaffold0086 (1 HSPs)
scaffold0086 (315-442)||(33826-33952)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 6171150 - 6171375
Alignment:
Q  17 aatagtagcatcattctttcacgtaaatcagacgaacatggagtcgtcttatcgaaatcatcatgtaatataattatggacttgtgtgtgacagagaaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6171150 aatagtagcatcattctttcacgtaaatcagacgaacatggagtcgtcttatcgaaatcatcatgtaatataattatggacttgtgtgtgacagagaaat 6171249  T
Q  117 cagaaacagaagcagtatgtatacagagttgaatgttcttcg-nnnnnnnnnaccatatcaatattatttgtatgtagttttcattatcgcatgtttgac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||  ||||||| |    
T  6171250 cagaaacagaagcagtatgtatacagagttgaatgttcttcgttttttttttaccatatcaatattatttgtatgtagttttcattatcttatgtttggc 6171349  T
Q  216 aaagattaagggtatgtttggttaac 241  Q
    ||||||||||||||||||||||||||    
T  6171350 aaagattaagggtatgtttggttaac 6171375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 328 - 449
Target Start/End: Original strand, 6171449 - 6171569
Alignment:
Q  328 tatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacataataaaatatattaca 427  Q
    ||||| ||| ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||    
T  6171449 tatttgatataagtgaaagtgaaaagaaagtgagagagaaagaaagagttatagttatgaaaagacataaatat-cttgaacataataaaatatattaca 6171547  T
Q  428 agaataaaataattagaataat 449  Q
    ||||||||||||| ||||||||    
T  6171548 agaataaaataataagaataat 6171569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 315 - 449
Target Start/End: Original strand, 7986118 - 7986252
Alignment:
Q  315 tgatttgtttagttatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacataat 414  Q
    |||||||||||||| |||  || ||||||||| ||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  7986118 tgatttgtttagttgtttggtataagtgaaagtgaaaagaaagtgaaaaagaaagaaagagttatagttatgaaaagacagaaatatccttgaacataat 7986217  T
Q  415 aaaatatattacaagaataaaataattagaataat 449  Q
    |||||||||||||||||||||||||| ||||||||    
T  7986218 aaaatatattacaagaataaaataataagaataat 7986252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 315 - 449
Target Start/End: Complemental strand, 44856962 - 44856828
Alignment:
Q  315 tgatttgtttagttatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacataat 414  Q
    |||||||||||||| |||  || |||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||| |||    
T  44856962 tgatttgtttagttgtttggtataagtaaaagtgaaaagaaagtgagagagaaagaaagagttatagttatgaaaagacataaatatccttgaacacaat 44856863  T
Q  415 aaaatatattacaagaataaaataattagaataat 449  Q
    |||||||||||||||||||||||||| ||||||||    
T  44856862 aaaatatattacaagaataaaataataagaataat 44856828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 45073022 - 45072895
Alignment:
Q  315 tgatttgtttagttatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacataat 414  Q
    |||||||||||||| |||  || ||||||||| |||||||||||| ||| |||||||||   |||| ||||||||||||| ||||||||| |||||||||    
T  45073022 tgatttgtttagttgtttggtaaaagtgaaagtgaaaagaaagtgtgagagaaagaaaggagtatagttatgaaaagacataaatatccttgaacataat 45072923  T
Q  415 aaaatatattacaagaataaaataatta 442  Q
    |||||||||||||| ||||| |||||||    
T  45072922 aaaatatattacaaaaataagataatta 45072895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 315 - 449
Target Start/End: Original strand, 24828509 - 24828644
Alignment:
Q  315 tgatttgtttagttatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacataat 414  Q
    |||||| ||||||| |||  || ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  24828509 tgatttttttagttgtttggtataagtgaaagtgaaaagaaagtgagaggaaaagaaagagttatagttatgaaaagacaaaaatatccttgaacataat 24828608  T
Q  415 -aaaatatattacaagaataaaataattagaataat 449  Q
     |||||||||||||||||||||||||| ||||||||    
T  24828609 aaaaatatattacaagaataaaataataagaataat 24828644  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 47498491 - 47498395
Alignment:
Q  315 tgatttgtttagttatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacat 411  Q
    |||||| ||||||| ||| ||| ||||||||| ||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  47498491 tgatttatttagttgtttgatataagtgaaagtgaaaagaaagtgaaagagaaagaaagagttatagttatgaaaagacaaaaatatccttgaacat 47498395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 47498377 - 47498323
Alignment:
Q  395 gaaatatcctagaacataataaaatatattacaagaataaaataattagaataat 449  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  47498377 gaaatatccttgaacataataaaatatattacaagaataaaataataagaataat 47498323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 26537262 - 26537135
Alignment:
Q  315 tgatttgtttagttatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacataat 414  Q
    |||||||||||||| |||  || ||||||||| |||||||||||| ||| |||||||||   |||| ||||||||||||| ||||||||| |||||||||    
T  26537262 tgatttgtttagttgtttggtaaaagtgaaagtgaaaagaaagtgtgagagaaagaaaggagtatagttatgaaaagacataaatatccttgaacataat 26537163  T
Q  415 aaaatatattacaagaataaaataatta 442  Q
    |||||||||||||| ||||| |||||||    
T  26537162 aaaatatattacaaaaataagataatta 26537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 338 - 442
Target Start/End: Original strand, 8399681 - 8399785
Alignment:
Q  338 aagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacataataaaatatattacaagaataaaat 437  Q
    ||||||||| |||||||||||| ||| |||||||||   |||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||    
T  8399681 aagtgaaagtgaaaagaaagtgtgagagaaagaaaggagtatagttatgaaaagacataaatatccttgaacataataaaatatattacaaaaataagat 8399780  T
Q  438 aatta 442  Q
    |||||    
T  8399781 aatta 8399785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 442
Target Start/End: Original strand, 33826 - 33952
Alignment:
Q  315 tgatttgtttagttatttaatacaagtgaaagcgaaaagaaagtgagagggaaagaaagagttataattatgaaaagacagaaatatcctagaacat-aa 413  Q
    ||||| |||||||| |||  || ||||||||| |||||||||| |||||  |||||||||  |||| ||||||||||||| ||||||| | |||||| ||    
T  33826 tgattagtttagttgtttggtaaaagtgaaagtgaaaagaaagcgagag--aaagaaagatatatagttatgaaaagacataaatatctttgaacataaa 33923  T
Q  414 taaaatatattacaagaataaaataatta 442  Q
    ||||||||||||||| |||||| ||||||    
T  33924 taaaatatattacaaaaataaagtaatta 33952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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