View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21659_low_7 (Length: 439)
Name: NF21659_low_7
Description: NF21659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21659_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 187 - 423
Target Start/End: Complemental strand, 20070224 - 20069985
Alignment:
| Q |
187 |
aaaacttggtatattctgtgggggtgaagataatgagaaagggataaaattggaattgtatattatttataggggtaaatgtataagtgtaggtggtggg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20070224 |
aaaacttggtatattctgtgggggtgaagataatgagaaagggataaaattggaattgtatattatttgtaggggtaaatgtataagtgtaggtggtggg |
20070125 |
T |
|
| Q |
287 |
tgatttttgggtcctaatcaagaatttatgttgctttatttcaaatgtcgtgcaacg---cccatataactgaatgatcaacggagagttgttagtggtt |
383 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
20070124 |
tgatttttgggtcgtaatcaagaatttatgttgctttatttcaaatgtcatgcaaggtgacccatataactgaatgatcaatggagagttggtagtgggt |
20070025 |
T |
|
| Q |
384 |
gaattttgggtcataatcaggtatttatgttagttaccat |
423 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
20070024 |
gaattttgggtcataattaggtatttatgttagtaaccat |
20069985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 15926138 - 15926197
Alignment:
| Q |
218 |
aatgagaaagggataaaattggaattgtatattatttataggggtaaatgtataagtgta |
277 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||| | |||||||| ||||||||||| |
|
|
| T |
15926138 |
aatgagaatgggataaaattggaatggtatatcatttgtcggggtaaaggtataagtgta |
15926197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 20021179 - 20021118
Alignment:
| Q |
218 |
aatgagaaagggataaaattggaattgtatattatttataggggtaaatgtataagtgtagg |
279 |
Q |
| |
|
||||| ||| ||||||||||| || | ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
20021179 |
aatgacaaaaggataaaattgaaaatttatataatttataggggtaaaagtataagtgtagg |
20021118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University