View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2165_high_1 (Length: 917)
Name: NF2165_high_1
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_high_1 |
 |  |
|
| [»] chr5 (6 HSPs) |
 |  |
|
| [»] scaffold1137 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr5 (Bit Score: 765; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 16 - 917
Target Start/End: Complemental strand, 18650699 - 18649799
Alignment:
| Q |
16 |
gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650699 |
gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt |
18650600 |
T |
 |
| Q |
116 |
tatggagtgggaannnnnnnnnnnnnnncattttaaaatccacgtaggcagtctatgtgnnnnnnnnnnnnnnnnn--cgaaacatgtcagctttaatcg |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18650599 |
tatggagtgggaattttttttttt----cattttaaaatccacgtaggcagtctatgtgaaaaaaaaaaataaaaaaacgaaacatgtcagctttaatcg |
18650504 |
T |
 |
| Q |
214 |
agtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtga |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650503 |
agtcaaaatcaaggggaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtga |
18650404 |
T |
 |
| Q |
314 |
aacttgagggacaaaaa-tgcatttaagcctttattatatcatatgttacttatcctaaacagatagtgaaaatataaattccggtaagctccacaatca |
412 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650403 |
aacttgagggacaaaaaatgcatttaagcctttattatatcatatgtttcttatcctaaacagatagtgaaaatataaattccggtaagctccacaatca |
18650304 |
T |
 |
| Q |
413 |
tcaatactaacaaccattgcctccgccctgaggtagtggttaaggaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtcttt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650303 |
tcaatactaacaaccattgcctccgcccagaggtagtggttaaggaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtcttt |
18650204 |
T |
 |
| Q |
513 |
aaggcacttgttaacatttttcttaataaaatgataatctttagacttttgtaggcactaggcaaacaatagtgatggcacgattttgactcatccacat |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650203 |
aaggcacttgttaacatttttcttaataaaatgataatctttagacttttgtaggcactaggcaaacaatagtgatggcacgattttgactcatccacat |
18650104 |
T |
 |
| Q |
613 |
ttttctatctacagaatatgaacattcaattaagatacttaaatcatgggactcgaattttccagatgtcttccagatccataatagtagaactgaactg |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650103 |
ttttctatctacagaatatgaacattcaattaagatacttaaatcatgggactcgaattttccagatgtcttccagatccataatagtagaactgaactg |
18650004 |
T |
 |
| Q |
713 |
gtcaaggggcattacctgatgccatgccatcacagctaagcagacccaaggcctttatttaccaagacttttttgcctagggtgttccattttccttgga |
812 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18650003 |
gtcaaggggcattacttgatgccatgccatcacagctaagcagacccaaggtctttatttaccaagacttttttgcctagggtgttccattttccttgga |
18649904 |
T |
 |
| Q |
813 |
gcacttaatgccaatgttagtaaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgat |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18649903 |
gcacttaatgccaatgttagtaaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgat |
18649804 |
T |
 |
| Q |
913 |
ttgtt |
917 |
Q |
| |
|
||||| |
|
|
| T |
18649803 |
ttgtt |
18649799 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 18650775 - 18650921
Alignment:
| Q |
196 |
acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttg-ggggccaaatgtgctattttaaaaataggggggc |
294 |
Q |
| |
|
||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
18650775 |
acatgtcagctttgaccgagtcgaaatcaaggg-gctcatggttttgcaaaggggctgaaacttgtggggccaaatgtgctattttgaaaataggggg-- |
18650871 |
T |
 |
| Q |
295 |
caaaatcgcaagtttgtgaaactt-gagggacaaaaatgcatttaagcct |
343 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||||| ||||||| ||||| |
|
|
| T |
18650872 |
caaaattgcaagtttgtgaaacttggggggccaaaagtgcatttgagcct |
18650921 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 18139382 - 18139416
Alignment:
| Q |
289 |
gggggccaaaatcgcaagtttgtgaaacttgaggg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18139382 |
gggggccaaaatcgcaagtttgtgaaacttgaggg |
18139416 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 19005766 - 19005852
Alignment:
| Q |
233 |
catggttttgcaaaggggctgaaacttgg-gggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaactt |
318 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||| ||| || ||||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
19005766 |
catggtgttgcaaagggggtgaaacttaaaggggaaaaagttctattttcaaacttggggggccaaaatcgcaagtttgtgaaactt |
19005852 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 507
Target Start/End: Original strand, 34903408 - 34903458
Alignment:
| Q |
457 |
gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtg |
507 |
Q |
| |
|
||||||||||||| ||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
34903408 |
gaatgcacaattttcaagataaagttactactttaagtttcttatcaagtg |
34903458 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 19005270 - 19005221
Alignment:
| Q |
201 |
tcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaagggg |
250 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19005270 |
tcagctttgattgagtcaaaatcaagggggaccatggttttgcaaagggg |
19005221 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 3e-63; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 48178294 - 48177975
Alignment:
| Q |
16 |
gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48178294 |
gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaaggaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt |
48178195 |
T |
 |
| Q |
116 |
tatggagtgggaannnnnnnnnnnnnnncattttaaaatccacgtaggcagtctatgtgnnnnnnnnnnnnnnnnncgaaacatgtcagctttaatcgag |
215 |
Q |
| |
|
|| |||||| ||| |||| |||||||||||||||||||||||||| || ||||||||| ||||| ||| |
|
|
| T |
48178194 |
taaggagtg-gaaattttatttatttttcattctaaaatccacgtaggcagtctatgtggaaaaaaaaa-------cgcgacatgtcagttttaactgag |
48178103 |
T |
 |
| Q |
216 |
tcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggc-caaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaa |
314 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||| |||| ||||||| |
|
|
| T |
48178102 |
tcaaaattaagggga-ccatggttttgcaaaggggttgaaacttggggggtcaaatgtgctattttgaaaatagggggggcaaaatcacaagcttgtgaa |
48178004 |
T |
 |
| Q |
315 |
actt-gagggacaaaaatgcatttaagcc |
342 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| |
|
|
| T |
48178003 |
acttggagggccaaaagtgcatttaagcc |
48177975 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 198 - 345
Target Start/End: Original strand, 15542280 - 15542428
Alignment:
| Q |
198 |
atgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaa |
297 |
Q |
| |
|
||||||| ||| | |||||||||||||| || ||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
15542280 |
atgtcagttttgaccgagtcaaaatcaaagggaaccatgcttttgcaaaggggcataaacttgagggccaaatgtgctattttcaaaatagggggaccaa |
15542379 |
T |
 |
| Q |
298 |
aatcgcaagtttgtgaaacttg-agggacaaaaatgcatttaagccttt |
345 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| ||||||||| ||||| |
|
|
| T |
15542380 |
aatcgcaagttttgcaaacttgaaggggcaaaagtgcatttaaaccttt |
15542428 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 48178626 - 48178747
Alignment:
| Q |
196 |
acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggcc |
295 |
Q |
| |
|
|||||| |||||| | || |||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||| | |
|
|
| T |
48178626 |
acatgttagctttgaccgggtcaaaatcaaggggg-ccatggttttacaaaggggctgaaacttggggaccaaatgagctattttgaaaatagggggg-c |
48178723 |
T |
 |
| Q |
296 |
aaaatcgcaagtttgtgaaacttg |
319 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
48178724 |
aaaattgcaagtttgtgaaacttg |
48178747 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 232 - 343
Target Start/End: Complemental strand, 7984122 - 7984009
Alignment:
| Q |
232 |
ccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaactt--gagggacaaaa |
329 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||| |||| |||||||||||| | ||| ||||| |
|
|
| T |
7984122 |
ccatggtttggcaaaggggctgaaacttgggggccgaatgtgctattttgaaaatagggggcctaaaattgcaattttgtgaaacttaggtgggccaaaa |
7984023 |
T |
 |
| Q |
330 |
atgcatttaagcct |
343 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7984022 |
ttgcatttaagcct |
7984009 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 21031481 - 21031410
Alignment:
| Q |
57 |
tgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggttatggagtgggaa |
128 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21031481 |
tgagtgaagaaggaggatggagatttatgtgtgaagaagaatgatgaaggagaaatggttatggagtgggaa |
21031410 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 15541785 - 15541677
Alignment:
| Q |
16 |
gaagaaaaatggtgtttgagaagaaggat-gaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatgg |
114 |
Q |
| |
|
||||||||||||| | |||| |||| || |||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||| || |
|
|
| T |
15541785 |
gaagaaaaatggttatggagatgaagaatagaaccatatttatgagtgaagaaggaggatgcagatttgtgtatgaaaaaagaggatgaaggacaaaggg |
15541686 |
T |
 |
| Q |
115 |
ttatggagt |
123 |
Q |
| |
|
| ||||||| |
|
|
| T |
15541685 |
taatggagt |
15541677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 41951589 - 41951722
Alignment:
| Q |
217 |
caaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaa |
315 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| || | |||| |||||||||| ||| | ||||| ||||||||||| ||| || || |
|
|
| T |
41951589 |
caaaatcaagggggaccatggttttgcaaagggggtgaaacttaaggaggcaaaagtgctattttcaaacttgggggatcaaaatcgcaaatttatggaa |
41951688 |
T |
 |
| Q |
316 |
cttgag-ggacaaaaatgcatttaagcctttatt |
348 |
Q |
| |
|
|||| | || ||||||||||||| | |||||||| |
|
|
| T |
41951689 |
cttgggaggtcaaaaatgcattttaacctttatt |
41951722 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 13499756 - 13499624
Alignment:
| Q |
215 |
gtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggggg-ccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtga |
313 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||| ||||||||||||| ||||| |||||||||| ||| | || ||| ||||||||||||||| | |
|
|
| T |
13499756 |
gtcaaaatcaaggggggccctggttttgaaaagggggtgaaacttggggggccaaaagtgctattttcaaacttggagggtcaaaatcgcaagttttaca |
13499657 |
T |
 |
| Q |
314 |
aactt-gagggacaaaaatgcatttaagccttt |
345 |
Q |
| |
|
||||| | ||| ||||| ||||||| ||||||| |
|
|
| T |
13499656 |
aacttggggggccaaaagtgcattttagccttt |
13499624 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 341
Target Start/End: Complemental strand, 15541550 - 15541404
Alignment:
| Q |
196 |
acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggc |
294 |
Q |
| |
|
||||||||||||| | | ||| ||||||||||| |||||||||||||||| |||||||||| |||||| ||| ||||||||| ||||| ||| || |
|
|
| T |
15541550 |
acatgtcagctttgaccaagtaaaaatcaaggg-gggcatggttttgcaaaggagctgaaacttggggggcaaaaagtgctatttccgaaataagggagc |
15541452 |
T |
 |
| Q |
295 |
caaaatcgcaagtttgtgaaacttg-agggacaaaaatgcatttaagc |
341 |
Q |
| |
|
|||||| | |||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
15541451 |
caaaattgtaagttttgcaaacttgaagggccaaaaatgcatttaagc |
15541404 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 3462010 - 3461895
Alignment:
| Q |
16 |
gaagaaaaatggtgtttgagaagaag---gatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
3462010 |
gaagaaaaatggtgtttgagaagaagaaggatgaactagatttatgagtgaagaaagaggatgcatatttgtgcgtgaagaaaaaggatgaaggagaaat |
3461911 |
T |
 |
| Q |
113 |
ggttatggagtgggaa |
128 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3461910 |
ggttatggagtgggaa |
3461895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 3462519 - 3462643
Alignment:
| Q |
196 |
acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggggg--ccaaatgtgctattttaaaaatagggggg |
293 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| | |||||||||| ||||| ||||||||||||||| |||||| ||||||||| |||||| ||||| |
|
|
| T |
3462519 |
acatgtcagctttgaccgagtcaaaatcaagggggatcatggttttgtaaaggagctgaaacttggggggaccaaatatgctattttgaaaata-ggggg |
3462617 |
T |
 |
| Q |
294 |
ccaaaatcgcaagtttgtgaaacttg |
319 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
3462618 |
ccaaaatcgcaagtctgtgaaacttg |
3462643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 337
Target Start/End: Original strand, 29360531 - 29360668
Alignment:
| Q |
201 |
tcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaa |
299 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||||||||||||||| |||||||| |||| ||| ||| |||||| ||| | |||||| |||| |
|
|
| T |
29360531 |
tcagctttgaccgagtcaaaatcaagggggaccatggttttgcaaaggcagtgaaacttaagggggaaaaagtgttattttcaaact-tgggggctaaaa |
29360629 |
T |
 |
| Q |
300 |
tcgcaagtttgtgaaacttga-gggacaaaaatgcattt |
337 |
Q |
| |
|
|||||||||||||||||| || ||| ||||| ||||||| |
|
|
| T |
29360630 |
tcgcaagtttgtgaaactagacgggccaaaagtgcattt |
29360668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 26067652 - 26067724
Alignment:
| Q |
238 |
ttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagttt |
309 |
Q |
| |
|
|||||| || ||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26067652 |
ttttgcgaaagggttgaaacttagggggccaataatgctattttgaaaataggggggccaaaatcgcaagttt |
26067724 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 29359734 - 29359605
Alignment:
| Q |
214 |
agtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtg |
312 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||||||| |||||||| |||| ||| |||||||||| ||| | |||||| ||||||||||||||||| |
|
|
| T |
29359734 |
agtcaaaatgaagggga-ccatggttttgcaaagggggtgaaacttaaggggaaaaaagtgctattttcaaact-tgggggctaaaatcgcaagtttgtg |
29359637 |
T |
 |
| Q |
313 |
aaacttgag-ggacaaaaatgcatttaagcct |
343 |
Q |
| |
|
| ||||| | || ||||| ||||||| ||||| |
|
|
| T |
29359636 |
acacttgggtggccaaaagtgcattttagcct |
29359605 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 532
Target Start/End: Original strand, 10409716 - 10409786
Alignment:
| Q |
462 |
cacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt |
532 |
Q |
| |
|
||||| || ||||| |||||| ||||||||| | |||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
10409716 |
cacaagtttcaagataaagtttctattttaaacctcttatcaagtgtcttaagggcacttgttaatatttt |
10409786 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 3461821 - 3461770
Alignment:
| Q |
213 |
gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggggg |
264 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
3461821 |
gagtcaaaatcaaggggggtcatggttttgcaaagggactgaaacttggggg |
3461770 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 3461763 - 3461714
Alignment:
| Q |
295 |
caaaatcgcaagtttgtgaaactt-gagggacaaaaatgcatttaagcct |
343 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||| ||||||||||||| |
|
|
| T |
3461763 |
caaaatcgcaagtttgtgaaacttggatggccaaaagtgcatttaagcct |
3461714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 28899845 - 28899882
Alignment:
| Q |
292 |
ggccaaaatcgcaagtttgtgaaacttgagggacaaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
28899845 |
ggccaaaatcgcaagtttgtgaaacttgggggccaaaa |
28899882 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 7e-30; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 39182698 - 39182588
Alignment:
| Q |
234 |
atggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaacttgagggac-aaaaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||| | |||| | |
|
|
| T |
39182698 |
atggttttgcaaaggggctgaaacttcgggggccaaatgtgctattttgaaaatag-ggggtcaaaatcacaagtttgtgaaacttgaggggctaaaagt |
39182600 |
T |
 |
| Q |
332 |
gcatttaagcct |
343 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39182599 |
gcatttaagcct |
39182588 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 39197702 - 39197614
Alignment:
| Q |
200 |
gtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaatag |
288 |
Q |
| |
|
||||||||| | ||||| |||||||||||| | |||||||||||| ||| || |||||||||||||||| | ||||||| ||||||| |
|
|
| T |
39197702 |
gtcagctttgaccgagttaaaatcaagggaggcaatggttttgcaatgggcctaaaacttgggggccaaaaatactattttcaaaatag |
39197614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 39198580 - 39198726
Alignment:
| Q |
196 |
acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggg-ggccaaatgtgctattttaaaaataggggggc |
294 |
Q |
| |
|
|||||||| |||| | |||||||||||||| ||| | |||||||||| ||||||| | ||| ||||| ||||||| ||||||||| |||| |||||| |
|
|
| T |
39198580 |
acatgtcatctttgaccgagtcaaaatcaa-ggagatcatggttttgtaaaggggttaaaatttgggaggccaaaagtgctatttctaaaacagggggat |
39198678 |
T |
 |
| Q |
295 |
caaaatcgcaagtttgtgaaacttgagggacaaaaatgcatttaagcct |
343 |
Q |
| |
|
||||||||||| |||| ||||||| ||| ||||| || |||| ||||| |
|
|
| T |
39198679 |
caaaatcgcaactttg-aaaacttgggggccaaaagtgtattttagcct |
39198726 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 532
Target Start/End: Complemental strand, 28517759 - 28517705
Alignment:
| Q |
478 |
aagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt |
532 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
28517759 |
aagttgctactttaagctttttatcaagtgtccttatggcacttgttaacatttt |
28517705 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 7875738 - 7875676
Alignment:
| Q |
289 |
gggggccaaaatcgcaagtttgtgaaacttgagggacaaaaatgcatttaagcctttattatat |
352 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||| | ||| |||| ||||||||||||||||| |
|
|
| T |
7875738 |
ggggaccaaaatcgcaagattgtgaaacatgaggg-ccaaactgcaattaagcctttattatat |
7875676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 21178230 - 21178092
Alignment:
| Q |
216 |
tcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaa |
314 |
Q |
| |
|
||||||||||||| || ||| |||| |||||||| |||||||| |||| |||| ||||||||| ||| |||||| |||||||| |||||| |||| |
|
|
| T |
21178230 |
tcaaaatcaagggggactatgatttttcaaaggggatgaaacttaagggggcaaaaatgctatttttaaacatggggggtcaaaatcgtaagtttatgaa |
21178131 |
T |
 |
| Q |
315 |
acttgag-ggacaaaaatgcatttaagcctttattatat |
352 |
Q |
| |
|
||||| | || |||||||| | || |||||||| ||||| |
|
|
| T |
21178130 |
acttgggaggtcaaaaatgtactttagcctttaatatat |
21178092 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 31272723 - 31272780
Alignment:
| Q |
212 |
cgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaa |
269 |
Q |
| |
|
||||||||||||| ||| | |||| |||||||||| | | |||||||||||||||||| |
|
|
| T |
31272723 |
cgagtcaaaatcacggggatccattgttttgcaaaagtggtgaaacttgggggccaaa |
31272780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 213 - 351
Target Start/End: Complemental strand, 18021861 - 18021722
Alignment:
| Q |
213 |
gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaat-gtgctattttaaaaataggggggccaaaatcgcaagtttgt |
311 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
18021861 |
gagtcaaaatgaagggggaccatggttttgcaaagggg-tgaaacttggggggtaaatagtgctatttttaaaatagggggaccaaaattgcaagttttg |
18021763 |
T |
 |
| Q |
312 |
gaaacttgaggga-caaaaatgcatttaagcctttattata |
351 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||| | |||||| |
|
|
| T |
18021762 |
aaaacttaagggaccaaaagtgcatttaagccataattata |
18021722 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 213 - 348
Target Start/End: Original strand, 20385463 - 20385599
Alignment:
| Q |
213 |
gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttg-ggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgt |
311 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||| |||||||| |||| |||| |||||||||| ||| | | |||||||||||| |||||||| |
|
|
| T |
20385463 |
gagtcaaaatcaagggga-ccatggttttacaaagggggtgaaactttagggggcaaaagtgctattttcaaatttgaggggccaaaatcataagtttgt |
20385561 |
T |
 |
| Q |
312 |
gaaactt-gagggacaaaaatgcatttaagcctttatt |
348 |
Q |
| |
|
||||||| | ||| ||||| ||||||| |||| ||||| |
|
|
| T |
20385562 |
gaaacttggggggccaaaagtgcattttagccattatt |
20385599 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 17138481 - 17138549
Alignment:
| Q |
242 |
gcaaaggggctgaaacttgggggccaaat-gtgctattttaaaaataggggggccaaaatcgcaagttt |
309 |
Q |
| |
|
|||||| |||| ||||||||||| | ||| |||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
17138481 |
gcaaagaggctaaaacttgggggaccaatagtgctattttgaaaataggggggccaaaattgcaagttt |
17138549 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 20390333 - 20390244
Alignment:
| Q |
197 |
catgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaata |
287 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| || |||||||||||||| |||||||||||| | ||| |||||||||| |||||| |
|
|
| T |
20390333 |
catgtcagctttgatcgagtcaaaattaaaggaggtcaaggttttgcaaagggtctgaaacttgggag-caatagtgctattttgaaaata |
20390244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 540
Target Start/End: Original strand, 6067582 - 6067665
Alignment:
| Q |
457 |
gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttttcttaata |
540 |
Q |
| |
|
|||| |||||||| |||| |||||| || |||| | ||||||||||| ||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
6067582 |
gaatacacaatttctaagataaagttgatactttatgtttcttatcaagggtcgttagggcacttgttagcatttttcttaata |
6067665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 18022039 - 18022166
Alignment:
| Q |
213 |
gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaat-gtgctattttaaaaataggggggccaaaatcgcaagtttgt |
311 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | | ||||||||| ||| ||| |||||||||| ||||||| | || ||||||||||||||| |
|
|
| T |
18022039 |
gagtcaaaatcaaggggggtcatggttttgcaaatgaggtgaaacttgaggggttaatagtgctattttcaaaatagagaggtcaaaatcgcaagttttg |
18022138 |
T |
 |
| Q |
312 |
gaaacttgagggacaaaaatgcatttaa |
339 |
Q |
| |
|
||||||| || ||||| ||||||||| |
|
|
| T |
18022139 |
aaaacttggaggtcaaaagtgcatttaa |
18022166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 20384685 - 20384598
Alignment:
| Q |
233 |
catggttttgcaaaggggctgaaacttg-ggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaacttg |
319 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||| |||| |||||||||| ||| | || || | |||||| ||||||||||||||||| |
|
|
| T |
20384685 |
catggttttgcaaatggggtgaaacttaaggggtcaaaagtgctattttcaaatttggaggactaaaatcacaagtttgtgaaacttg |
20384598 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 531
Target Start/End: Original strand, 6420300 - 6420374
Alignment:
| Q |
457 |
gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacattt |
531 |
Q |
| |
|
||||||||| ||| ||| | |||||||||| |||||| ||||||||||||| | | | ||||||||||| ||||| |
|
|
| T |
6420300 |
gaatgcacattttccaaaataaagttactactttaagtttcttatcaagtgccctaagggcacttgttagcattt |
6420374 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 1900596 - 1900668
Alignment:
| Q |
457 |
gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacat |
529 |
Q |
| |
|
||||||||||||| |||| ||| |||||| |||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1900596 |
gaatgcacaatttctaagataaaattactactttaagcttcttatcaagtgtccttagggcacttgttaacat |
1900668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 532
Target Start/End: Complemental strand, 42088503 - 42088434
Alignment:
| Q |
463 |
acaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt |
532 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
42088503 |
acaatttccaagataaagttactattttaagtttcttatctaatgtctttagggcacttgttagcatttt |
42088434 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 38885022 - 38885115
Alignment:
| Q |
195 |
aacatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaatag |
288 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| | |||||||||||||||| ||| |||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
38885022 |
aacatgtcagctttcaccgagtcaaaatcaaggg-gatcatggttttgcaaaggagctaaaacttagggggccaaaagtgctatttccaaaatag |
38885115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 16692487 - 16692410
Alignment:
| Q |
233 |
catggttttgcaaaggggctgaaacttggg-ggccaaatgtgctattttaaaaataggggggccaaaatcgcaagttt |
309 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||||| |||||| ||| | |||||||||||||||||||| |
|
|
| T |
16692487 |
catggttttgcaaagggggtgaaacttgggagatcaaatgtgatattttcaaatttaaggggccaaaatcgcaagttt |
16692410 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 18582617 - 18582566
Alignment:
| Q |
295 |
caaaatcgcaagtttgtgaaacttgaggga-caaaaatgcatttaagccttt |
345 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
18582617 |
caaaatcgcaagtttgtgaaacttgagaaaccaaaaatgcattttagccttt |
18582566 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 532
Target Start/End: Original strand, 26009751 - 26009826
Alignment:
| Q |
457 |
gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt |
532 |
Q |
| |
|
|||| ||||| || ||||| |||||| || ||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
26009751 |
gaatacacaaattccaagataaagtttttactttaaatttcttatcaagtgtcttaagggcacttgttaacatttt |
26009826 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 337
Target Start/End: Original strand, 23572035 - 23572161
Alignment:
| Q |
212 |
cgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggcc-aaatgtgctattttaaaaataggggggccaaaatcgcaagtttg |
310 |
Q |
| |
|
||||||||||| ||||| | ||||| | ||||||||| ||||||||||||| ||| ||| |||||| ||| | ||| || |||||||||||||||| |
|
|
| T |
23572035 |
cgagtcaaaattaaggggggctatggtctcgcaaagggggtgaaacttggggggttaaaagtgttatttttaaacttgggaggtcaaaatcgcaagtttg |
23572134 |
T |
 |
| Q |
311 |
tgaaacttgagggacaaaaatgcattt |
337 |
Q |
| |
|
||||||| || ||||||||||||| |
|
|
| T |
23572135 |
aaaaacttgcagggcaaaaatgcattt |
23572161 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1137 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1137
Description:
Target: scaffold1137; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 500
Target Start/End: Complemental strand, 863 - 820
Alignment:
| Q |
457 |
gaatgcacaatttgcaagacaaagttactattttaagcttctta |
500 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
863 |
gaatgcacaatttccaagacaaagttactactttaagtttctta |
820 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 32771103 - 32771008
Alignment:
| Q |
215 |
gtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggc-caaatgtgctattttaaaaataggggggccaaaatcgcaagttt |
309 |
Q |
| |
|
|||||||||||||| | || |||||||||||||| |||||||| |||| |||| |||||||||| ||| | ||| || ||||||||||||||| |
|
|
| T |
32771103 |
gtcaaaatcaaggggcgctatagttttgcaaagggggtgaaacttaggggttcaaaagtgctattttcaaacttgggaggtcaaaatcgcaagttt |
32771008 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 26478052 - 26478007
Alignment:
| Q |
486 |
attttaagcttcttatcaagtgtctttaaggcacttgttaacattt |
531 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||||||||||| |
|
|
| T |
26478052 |
attttaagtttcttatcaagtgtttttagggtacttgttaacattt |
26478007 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 35838654 - 35838699
Alignment:
| Q |
487 |
ttttaagcttcttatcaagtgtctttaaggcacttgttaacatttt |
532 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||||||| |||||| |
|
|
| T |
35838654 |
ttttaagctttttaacaagtgtcttaaaggcacttgttagcatttt |
35838699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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