View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2165_high_2 (Length: 666)
Name: NF2165_high_2
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Complemental strand, 48894766 - 48894121
Alignment:
| Q |
18 |
gaagcttcgatttattgctgtggttgttatgctgttaagttgtacggagagacacaaatcaactgcaaagggttcagagaatgaatacacagtagaatca |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48894766 |
gaagcttcgatttatggctgtggttgttatgctgttaagttgtacggagagacacaaatcaactgcaaagggttcagagaatgaatacacagttgaatca |
48894667 |
T |
|
| Q |
118 |
gtgagagcatctttaattagacaagaggatacaatcatatttagtgtgattgagagagcaagattcccacttaattctcccacctaccatcaacattatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48894666 |
gtgagagcatctttaattagacaagaggatacaatcatatttagtgtgattgagagagcaagattcccacttaattctcccacctaccatcaacattatg |
48894567 |
T |
|
| Q |
218 |
cttccattcctcacttttctggctccttgctcgatgtcgttcttgactatacagaagccattcaagccaaggtagttgctacttcctaccttgcttaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48894566 |
cttccattcctcacttttctggctccttgctcgatgtcgttcttgactatacagaagccattcaagccaaggtagttgctacttcctaccttgcttaatt |
48894467 |
T |
|
| Q |
318 |
acagatattatttatttcctctcatatttgaaccggtaattttttatgataacaatttgtattagaatttattggccttcacttgtgtgtttttggtgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48894466 |
acagatattatttatttcctctcatatttgaaccggtaattttttatgataacaatttgtattagaatttattggccttcacttgtgtgtttttggtgat |
48894367 |
T |
|
| Q |
418 |
tgttctactgaccacatcttcctactcnnnnnnncttatcctctggtccnnnnnnnggtaaggttgaacaacatgaagaacttatttagagcaattatct |
517 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48894366 |
tgttctaatgaccacatcttcctactctttttttcttatcctctggtcctttttttggtaaggttgaacaacatgaagaacttatttagagcaattatct |
48894267 |
T |
|
| Q |
518 |
g----------nnnnnnnnnatacctatgcatgtgtatgtgtatgnnnnnnnngttgttaaatagccggaattcaac-nnnnnnnnaaggtgaataagtt |
606 |
Q |
| |
|
| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
48894266 |
gtgttttttttttcttttttttacctatgcatgtgtatgtgtatgttttttt--ttgtcaaatagccggaattcaactttttttttaaggtgaataagtt |
48894169 |
T |
|
| Q |
607 |
gggatttaaggtttgaactccgacccctatatataacaatgcatgttc |
654 |
Q |
| |
|
|| |||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48894168 |
ggtatttgaggttcgaactccgacccctatatataacaatgcatgttc |
48894121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 616 - 652
Target Start/End: Complemental strand, 4985819 - 4985783
Alignment:
| Q |
616 |
ggtttgaactccgacccctatatataacaatgcatgt |
652 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
4985819 |
ggttcgaaccccgacccctatatataacaatgcatgt |
4985783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 616 - 652
Target Start/End: Complemental strand, 17557090 - 17557054
Alignment:
| Q |
616 |
ggtttgaactccgacccctatatataacaatgcatgt |
652 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
17557090 |
ggtttgaaccccgacccctacatataacaatgcatgt |
17557054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University