View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2165_high_3 (Length: 527)
Name: NF2165_high_3
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_high_3 |
 | |
|
| [»] scaffold0586 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 291 - 521
Target Start/End: Complemental strand, 26661646 - 26661413
Alignment:
| Q |
291 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
26661646 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa |
26661547 |
T |
|
| Q |
388 |
ttggcaagcagttgatgcacacacaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26661546 |
ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg |
26661447 |
T |
|
| Q |
488 |
ggaatggcaagggtagaagaggtatattcttgga |
521 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |
|
|
| T |
26661446 |
ggaatggcaagggtagaagaggtattttgttgga |
26661413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 26661923 - 26661745
Alignment:
| Q |
14 |
aggcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtggg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
26661923 |
aggcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgttatggttattagcatattttggaaaaagttagaagaaggtggt |
26661824 |
T |
|
| Q |
114 |
ttaataaaaacaagttgtctctaaccnnnnnnngcattgattcatgattgggaaaaaacaagaattgccaaacagtggg |
192 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26661823 |
ttaataaaaacaagttgtctctaaccttttttttcattgattcatgattgggaaaaaacaagaattgccaaacagtggg |
26661745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 299 - 426
Target Start/End: Complemental strand, 6050043 - 6049912
Alignment:
| Q |
299 |
tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaattggcaag |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||| | |||| || | ||||| |
|
|
| T |
6050043 |
tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag |
6049944 |
T |
|
| Q |
396 |
cagttgatgcaca-cacaaagatcatgagttt |
426 |
Q |
| |
|
||||||||| ||| ||||||||| ||| |||| |
|
|
| T |
6049943 |
cagttgatgaacaccacaaagatgatgggttt |
6049912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 291 - 521
Target Start/End: Complemental strand, 21481564 - 21481331
Alignment:
| Q |
291 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttca---gaagagtgaaatcaaaaacccaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
21481564 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa |
21481465 |
T |
|
| Q |
388 |
ttggcaagcagttgatgcacacacaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg |
487 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21481464 |
ttggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagca |
21481365 |
T |
|
| Q |
488 |
ggaatggcaagggtagaagaggtatattcttgga |
521 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |
|
|
| T |
21481364 |
ggaatggcaagggtagaagaggtattttgttgga |
21481331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 21481840 - 21481663
Alignment:
| Q |
16 |
gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtgggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21481840 |
gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattagcatattttgggaaaagttagaagaaggtgggtt |
21481741 |
T |
|
| Q |
116 |
aataaaaacaagttgtctct-aaccnnnnnnngcattgattcatgattggg-aaaaaacaagaattgccaaacagtgg |
191 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21481740 |
aataaaaacaagttgtctctaaacttttttttgcattgattcatgattgggaaaaaaacaagaattgccaaacagtgg |
21481663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 421
Target Start/End: Complemental strand, 19701298 - 19701164
Alignment:
| Q |
291 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaa |
387 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||| ||| |
|
|
| T |
19701298 |
cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa |
19701199 |
T |
|
| Q |
388 |
ttggcaagcagttgatgcacac-acaaagatcatg |
421 |
Q |
| |
|
| |||||||||||||| |||| |||||||||||| |
|
|
| T |
19701198 |
atagcaagcagttgatgaacactacaaagatcatg |
19701164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 305 - 500
Target Start/End: Original strand, 13331531 - 13331727
Alignment:
| Q |
305 |
caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttca---gaagagtgaaatcaaaaacccaattggcaagcagttg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
13331531 |
caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg |
13331630 |
T |
|
| Q |
402 |
atgcacacacaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaaggg |
500 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13331631 |
atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatggcaaggg |
13331727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 305 - 500
Target Start/End: Original strand, 13342446 - 13342642
Alignment:
| Q |
305 |
caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttca---gaagagtgaaatcaaaaacccaattggcaagcagttg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
13342446 |
caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg |
13342545 |
T |
|
| Q |
402 |
atgcacacacaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaaggg |
500 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13342546 |
atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg |
13342642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 305 - 500
Target Start/End: Original strand, 5672002 - 5672198
Alignment:
| Q |
305 |
caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttca---gaagagtgaaatcaaaaacccaattggcaagcagttg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
5672002 |
caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg |
5672101 |
T |
|
| Q |
402 |
atgcacacacaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaaggg |
500 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
5672102 |
atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg |
5672198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 291 - 500
Target Start/End: Original strand, 32717808 - 32718020
Alignment:
| Q |
291 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaa |
387 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
32717808 |
cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa |
32717907 |
T |
|
| Q |
388 |
ttggcaagcagttgatgcacac-acaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaat--cagagaaaaagaata |
484 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||| |||||||||| || |||| |||||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
32717908 |
acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-ttta |
32718004 |
T |
|
| Q |
485 |
gcgggaatggcaaggg |
500 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32718005 |
gcgggaatggcaaggg |
32718020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 291 - 500
Target Start/End: Complemental strand, 10637786 - 10637574
Alignment:
| Q |
291 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaa |
387 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||| ||| |
|
|
| T |
10637786 |
cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa |
10637687 |
T |
|
| Q |
388 |
ttggcaagcagttgatgcacac-acaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaat--cagagaaaaagaata |
484 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||| |||||||||| || |||| |||||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
10637686 |
acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-ttta |
10637590 |
T |
|
| Q |
485 |
gcgggaatggcaaggg |
500 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10637589 |
gcgggaatggcaaggg |
10637574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 291 - 500
Target Start/End: Complemental strand, 22893941 - 22893729
Alignment:
| Q |
291 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaa |
387 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||| ||| |
|
|
| T |
22893941 |
cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa |
22893842 |
T |
|
| Q |
388 |
ttggcaagcagttgatgcacac-acaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaat--cagagaaaaagaata |
484 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||| |||| || |||| |||||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
22893841 |
acagcaagcagttgatgaacactacaaagatcatgggtttcctttt-tatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-ttta |
22893745 |
T |
|
| Q |
485 |
gcgggaatggcaaggg |
500 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22893744 |
gcgggaatggcaaggg |
22893729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 426
Target Start/End: Complemental strand, 44306259 - 44306129
Alignment:
| Q |
299 |
tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaattggcaag |
395 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | | |||| ||||||||||| |||||||||||||| | |||| || | ||||| |
|
|
| T |
44306259 |
tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag |
44306161 |
T |
|
| Q |
396 |
cagttgatgcaca-cacaaagatcatgagttt |
426 |
Q |
| |
|
||||||||| ||| ||||||||| ||| |||| |
|
|
| T |
44306160 |
cagttgatgaacaccacaaagatgatgggttt |
44306129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 305 - 483
Target Start/End: Original strand, 15761973 - 15762154
Alignment:
| Q |
305 |
caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaattggcaagcagttg |
401 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| || |||| ||||||||||||| || |||| |||| ||||| |
|
|
| T |
15761973 |
caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg |
15762072 |
T |
|
| Q |
402 |
atgcacacacaaagatcatgagtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaat |
483 |
Q |
| |
|
||| ||| ||||||||||| | | |||||||| |||| | |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
15762073 |
atgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat |
15762154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 421
Target Start/End: Complemental strand, 9731 - 9597
Alignment:
| Q |
291 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaa |
387 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
9731 |
cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa |
9632 |
T |
|
| Q |
388 |
ttggcaagcagttgatgcacac-acaaagatcatg |
421 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |
|
|
| T |
9631 |
acaacaagcagttgatgaacactacaaagatcatg |
9597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 13893697 - 13893810
Alignment:
| Q |
299 |
tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtacctt---cagaagagtgaaatcaaaaacccaattggcaag |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||| | |||| || | |||| |
|
|
| T |
13893697 |
tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaag |
13893796 |
T |
|
| Q |
396 |
cagttgatgcacac |
409 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
13893797 |
cagttgatgaacac |
13893810 |
T |
|
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