View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2165_high_4 (Length: 427)
Name: NF2165_high_4
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 31429235 - 31429620
Alignment:
| Q |
17 |
aagtgtcggtatagataatcagatatatttacatgtcatattcatacatttaaattcatgcaaaaagtcacgattaatcttgtttgtgtggcaaaacccc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31429235 |
aagtgtcggtatagataatcagatatatttacatgtcatattcatacatttaaattcatgaaaaaagtcacgattaatcttgtttgtgtggcaaaacc-- |
31429332 |
T |
|
| Q |
117 |
atagaggataaaattaactgatgtttatgaacattcaggagggtggccaagtgcaccagacggaccatatgcgtggggatattgctttgtcaccgaaaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31429333 |
atagaggataaaattaactgatgtttatgaacatgcaggagggtggccaagtgcaccagacggaccatatgcgtggggatattgctttgtcaccgaaaag |
31429432 |
T |
|
| Q |
217 |
aatgcccaaggagacttttgttcacccggagattggccatgtgctcctggtaaaagatactatggtagaggacctattcaactcactcagtaagtttctt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31429433 |
gatgcccaaggagacttttgttcacccggagattggccatgtgctcctggtaaaagatactatggcagaggacctattcaactcactcagtaagtttctt |
31429532 |
T |
|
| Q |
317 |
tcacctagcattttaaacaaccccatctaaatctctaattacataaaagagaaagtttagaggaatgataattgtacaattatttttt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31429533 |
tcacctagcattttaaacaaccccatctaaatctctaatgacataaaagagaaagtttagaggaatgataattgtgcaattatttttt |
31429620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 31444420 - 31444586
Alignment:
| Q |
153 |
aggagggtggccaagtgcaccagacggaccatatgcgtggggatattgctttgtcaccgaaaagaatgcccaaggagacttttgttcacccggagattgg |
252 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| |||||||||||||||||||| | ||| ||| ||| | |||| ||||||||||||| |||| |
|
|
| T |
31444420 |
aggagggtggccaactgcacctgacggtccatacgcgtggggatattgctttgtgaatgaacgcaatcccccgagtgactattgttcacccggaacttgg |
31444519 |
T |
|
| Q |
253 |
ccatgtgctcctggtaaaagatactatggtagaggacctattcaactcactcagtaagtttctttca |
319 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31444520 |
ccatgtgctcctggtaaaagatactacggcagaggaccaattcaactcactcagtaagcttctttca |
31444586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 31434272 - 31434336
Alignment:
| Q |
144 |
tgaacattcaggagggtggccaagtgcaccagacggaccatatgcgtggggatattgctttgtca |
208 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31434272 |
tgaacatgcaggagggtggtcaagtgcaccagacggtccatatgcgtggggatattgctttgtca |
31434336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University