View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2165_high_5 (Length: 362)
Name: NF2165_high_5
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 898645 - 898306
Alignment:
| Q |
5 |
gagtgaaatgaaagacgagatgttgtgtaaactttaatgcattggagaaaggttttcttgggggaagagcactaagaacataggctagtaggaccaaggt |
104 |
Q |
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| T |
898645 |
gagtgacatcaaagacgagatgttgtgtaaactttaatgcattggagaaaggttttcttgggggaagagcactaagaacataggctagtaggaccaaggt |
898546 |
T |
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| Q |
105 |
ttcaatgattcagaagagacagagtatgtgcataattattttaggccaatgaaggcaccaaatttgagatcaagagatgggggtggtattggcacctctc |
204 |
Q |
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| T |
898545 |
ttcaatgattcagaagagacagagtatgtgcataattattttaggccaatgaaggcaccaaatttgagatcaagagatgggggtggtattggcac--ctc |
898448 |
T |
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| Q |
205 |
tatgtcaaaattcaggtaaaaccgaccttggttgtgtcgaaaaagttggaattgttcggccaaatataaaacattttctctattgggattgaaatctgga |
304 |
Q |
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| T |
898447 |
tatgtcaaaattcaggtaaaaccgaccttggttgtgtcgaaaaagttggaattgttcggccaaatataaaacattttctctattgggattgaaatctgga |
898348 |
T |
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| Q |
305 |
caaaggttaataatttcgtctatgatggtttgaggtagctga |
346 |
Q |
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| T |
898347 |
caaaggttaataatttcgtctatgatggtttgaggtagctga |
898306 |
T |
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