View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2165_high_6 (Length: 357)
Name: NF2165_high_6
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 38574177 - 38573847
Alignment:
| Q |
11 |
cataggattctgaaggaaatgttctgaacttacagctttaagcattccccttgtatcataatggtaaccaccagagaatccattaactgtatcagctctc |
110 |
Q |
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| T |
38574177 |
cataggattctgaaggaaatgttctgaacttacagctttaagcattccccttgtgtcataatggtaaccaccagagaatccactaactgtatcagctctc |
38574078 |
T |
|
| Q |
111 |
aagtaaagcatcaaccaaggatacttctttgaagtctttaacttatgcttaaacaaccaactcccaacattaactttcttctcccaaaccacctcataaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38574077 |
aagtaaagcatcaaccaaggatacttctttgaagtctttaacttatgcttaaacaaccaactcccaacattaactttcttctcccaaaccacctcataaa |
38573978 |
T |
|
| Q |
211 |
atgaaagattgttattatcatcaagtccactatctctacaactagaatccaaatcataagtaccattaaatcctcctctcattacatcaccttccagctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38573977 |
atgaaagattgttattatcatcaagtccactatctctacaactagaatccaaatcataagtaccattaaatcctcctctcattacatcaccttccagctt |
38573878 |
T |
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| Q |
311 |
tgtccattgatgacacaagataggttggttc |
341 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38573877 |
tgtccattgatgacacaagataggttggttc |
38573847 |
T |
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