View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2165_high_9 (Length: 317)

Name: NF2165_high_9
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2165_high_9
NF2165_high_9
[»] chr2 (26 HSPs)
chr2 (12-243)||(30732005-30732237)
chr2 (24-243)||(30733985-30734205)
chr2 (40-243)||(32918077-32918281)
chr2 (40-243)||(43850046-43850250)
chr2 (126-288)||(2841010-2841173)
chr2 (23-240)||(9020847-9021065)
chr2 (24-243)||(9026783-9027003)
chr2 (24-245)||(9008016-9008238)
chr2 (23-243)||(8973309-8973530)
chr2 (93-238)||(19232359-19232504)
chr2 (167-243)||(9032050-9032126)
chr2 (133-233)||(10763878-10763978)
chr2 (159-272)||(9023415-9023528)
chr2 (126-243)||(9030395-9030512)
chr2 (173-243)||(8979319-8979389)
chr2 (127-243)||(8992145-8992262)
chr2 (126-243)||(9016490-9016611)
chr2 (173-243)||(8984690-8984760)
chr2 (128-243)||(8988452-8988568)
chr2 (133-238)||(6471709-6471813)
chr2 (129-212)||(17225659-17225743)
chr2 (126-236)||(35701893-35702003)
chr2 (126-209)||(17275862-17275945)
chr2 (103-185)||(8912989-8913074)
chr2 (24-80)||(8992294-8992349)
chr2 (202-237)||(39814115-39814150)
[»] chr1 (21 HSPs)
chr1 (12-243)||(14669587-14669819)
chr1 (12-243)||(14706085-14706317)
chr1 (33-243)||(14708575-14708786)
chr1 (15-243)||(14654222-14654450)
chr1 (15-243)||(14664013-14664241)
chr1 (12-243)||(14683747-14683979)
chr1 (32-243)||(14716288-14716500)
chr1 (15-240)||(14652525-14652752)
chr1 (15-240)||(14662316-14662543)
chr1 (46-243)||(14674478-14674676)
chr1 (46-243)||(14681596-14681794)
chr1 (15-243)||(14679856-14680085)
chr1 (24-243)||(38175420-38175640)
chr1 (32-272)||(28366097-28366338)
chr1 (24-243)||(14667007-14667221)
chr1 (103-243)||(33988067-33988208)
chr1 (145-243)||(14676629-14676727)
chr1 (123-237)||(11872471-11872585)
chr1 (162-234)||(37422175-37422247)
chr1 (168-243)||(28698550-28698625)
chr1 (127-186)||(14703134-14703193)
[»] chr8 (15 HSPs)
chr8 (32-243)||(10944297-10944509)
chr8 (126-296)||(44878927-44879097)
chr8 (126-296)||(44880824-44880994)
chr8 (22-240)||(40054312-40054531)
chr8 (39-288)||(41841058-41841307)
chr8 (42-238)||(37679757-37679953)
chr8 (40-240)||(37682057-37682258)
chr8 (128-223)||(44582870-44582965)
chr8 (140-243)||(42555090-42555193)
chr8 (167-273)||(42220880-42220985)
chr8 (167-246)||(42092015-42092093)
chr8 (197-243)||(42872514-42872560)
chr8 (134-186)||(44583111-44583162)
chr8 (126-180)||(42554655-42554709)
chr8 (24-89)||(42872408-42872471)
[»] chr4 (17 HSPs)
chr4 (39-243)||(11652298-11652502)
chr4 (33-243)||(49106428-49106639)
chr4 (33-240)||(3461042-3461249)
chr4 (93-243)||(50077158-50077309)
chr4 (25-243)||(49108524-49108743)
chr4 (128-239)||(26998735-26998846)
chr4 (134-239)||(26984668-26984773)
chr4 (128-239)||(48205832-48205943)
chr4 (126-212)||(21503706-21503792)
chr4 (135-238)||(41013548-41013651)
chr4 (133-233)||(26982549-26982646)
chr4 (131-204)||(35806165-35806238)
chr4 (140-239)||(49533638-49533730)
chr4 (133-176)||(54677590-54677633)
chr4 (133-183)||(34481105-34481155)
chr4 (180-233)||(6431957-6432010)
chr4 (199-235)||(34481155-34481191)
[»] chr5 (8 HSPs)
chr5 (24-240)||(7524968-7525185)
chr5 (37-295)||(3643585-3643843)
chr5 (126-243)||(1716444-1716562)
chr5 (128-236)||(4103249-4103357)
chr5 (103-207)||(5350672-5350777)
chr5 (131-238)||(16037861-16037966)
chr5 (169-233)||(19261152-19261216)
chr5 (126-186)||(13636366-13636426)
[»] chr6 (8 HSPs)
chr6 (84-243)||(10795840-10796000)
chr6 (25-243)||(10791543-10791762)
chr6 (43-240)||(30521242-30521440)
chr6 (43-186)||(13136608-13136752)
chr6 (128-238)||(8875691-8875803)
chr6 (126-197)||(11333273-11333344)
chr6 (41-114)||(10509478-10509551)
chr6 (134-233)||(21216032-21216131)
[»] chr7 (2 HSPs)
chr7 (126-240)||(27134511-27134625)
chr7 (126-234)||(8128149-8128256)
[»] chr3 (1 HSPs)
chr3 (192-238)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (129-186)||(5450-5507)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 30732237 - 30732005
Alignment:
Q  12 atgaaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagct 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  30732237 atgaaccagaataaaaatttaaacttgaattggtggggtgcaccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagct 30732138  T
Q  112 acttaagtggcctcccccc-tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttg 210  Q
    ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  30732137 accaaagtggcctccccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttg 30732038  T
Q  211 atcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||||||||||||||    
T  30732037 atcttagccaaaaggccgagaaaggtatgagtt 30732005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 30734205 - 30733985
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcc 123  Q
    |||||||| |||||| |||||||||||||||||  ||||||| |||||||||| || || |||||| | |||||||||||||||||||||| || ||||     
T  30734205 aaaaatttgaacttggattggtggggtgcgccaagccaatgcaatagtgcaacgcactggcgacactcgagaagcctagtagcaagctactaaaatggct 30734106  T
Q  124 tc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 222  Q
    || |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30734105 tctccccctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 30734006  T
Q  223 aggccgagaaaggtatgagtt 243  Q
    |||||||||||||||| ||||    
T  30734005 aggccgagaaaggtataagtt 30733985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 32918281 - 32918077
Alignment:
Q  40 attggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaa 138  Q
    ||||||| ||||||||| || |||||||||||||||| ||||  |||||||  ||||||  ||||||||||||||  | |||| || |||||||||||||    
T  32918281 attggtgaggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggcttctccccctcaaaaaa 32918182  T
Q  139 gtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918181 gtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 32918082  T
Q  239 gagtt 243  Q
    |||||    
T  32918081 gagtt 32918077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 43850250 - 43850046
Alignment:
Q  40 attggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaa 138  Q
    |||||| ||||||||||  || |||| |||||||||| ||| | |||||||  ||||| | | |||||||||| | ||||| |||| |||||||||||||    
T  43850250 attggttgggtgcgccaagcctatgcaatagtgcaacgcataggcgacacattagaagtccaatagcaagctattgaagtgacctctccccctcaaaaaa 43850151  T
Q  139 gtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 238  Q
    || |||||||||| |||||  |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850150 gtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 43850051  T
Q  239 gagtt 243  Q
    |||||    
T  43850050 gagtt 43850046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 126 - 288
Target Start/End: Original strand, 2841010 - 2841173
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2841010 ccccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaagg 2841109  T
Q  226 ccgagaaaggtatgag-tttaatctcgggctcgcctctgcttttatatccctcgtccactcact 288  Q
    ||||||||||||||||  ||||    |||||||| |||||||||||||| | | ||||||||||    
T  2841110 ccgagaaaggtatgagagttaaaaaggggctcgcgtctgcttttatatctcacatccactcact 2841173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 9021065 - 9020847
Alignment:
Q  23 taaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggc 122  Q
    ||||||||| |||||||||||||||||||| ||| ||| |||| |||||||||||||| |  |||||   ||||||| | ||||||| || | || ||||    
T  9021065 taaaaatttgaacttgaattggtggggtgcacca-acctatgcaatagtgcaacacataggtgacacttgagaagcccaatagcaagttattgaaatggc 9020967  T
Q  123 ctccc-ccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagcca 220  Q
    ||| | ||||||||||||||||||||||  || |||| ||||||| |||||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  9020966 ctctcaccctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatcttagcca 9020867  T
Q  221 aaaggccgagaaaggtatga 240  Q
    ||||||||||||| ||||||    
T  9020866 aaaggccgagaaatgtatga 9020847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 9027003 - 9026783
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcc 123  Q
    |||||||| |||||||||||| |||||| ||||| ||||||| |||||||||  ||| | ||||||   |||| || | |||||||||| | || ||| |    
T  9027003 aaaaatttgaacttgaattggaggggtgtgccag-ccaatgcaatagtgcaaagcataggcgacacttgagaaacccaatagcaagctattgaaatggtc 9026905  T
Q  124 tccccc-ctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 221  Q
    || ||| ||||||||||||||||||||  || |||| ||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9026904 tctcccactcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaa 9026805  T
Q  222 aaggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||||    
T  9026804 aaggccgagaaaggtatgagtt 9026783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 9008238 - 9008016
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcc 123  Q
    ||||| || |||| |||||||||||||| ||||| | ||||| |||||||||  ||| | ||||||   |||| || | || |||| || | || |||||    
T  9008238 aaaaaattgaactagaattggtggggtgtgccag-cgaatgcaatagtgcaaagcataggcgacacttgagaaacccaataacaagttattgaaatggcc 9008140  T
Q  124 tc-ccccctcaaaaaagtaatttaatatcgtg-tgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 221  Q
    || ||||||||||||||||||||||||  ||  ||| ||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9008139 tctccccctcaaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaa 9008040  T
Q  222 aaggccgagaaaggtatgagttta 245  Q
    ||||||||||||||||||||||||    
T  9008039 aaggccgagaaaggtatgagttta 9008016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 8973530 - 8973309
Alignment:
Q  23 taaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggc 122  Q
    ||||||||| ||||||||||||||||| |||||||  || ||| |||||||||| |||   | ||||   |||| || |  ||||||||| | || |||     
T  8973530 taaaaatttgaacttgaattggtggggcgcgccagctca-tgcaatagtgcaacgcatatgcaacacttgagaaacccaacagcaagctattgaaatggt 8973432  T
Q  123 ctc-ccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagcca 220  Q
    ||| |||||| |||||||||||||||||| || |||| ||||||| ||||  ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8973431 ctctcccccttaaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagcca 8973332  T
Q  221 aaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||||    
T  8973331 aaaggccgagaaaggtatgagtt 8973309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 19232359 - 19232504
Alignment:
Q  93 agaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgata 191  Q
    ||||||| | |||||||||| | ||||||| || |||||||||||| |||||||||||| |||||| ||| |||  |||||||||| |||||||| ||||    
T  19232359 agaagcccaatagcaagctattgaagtggcttctccccctcaaaaaggtaatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgata 19232457  T
Q  192 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 238  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  19232458 agaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 9032126 - 9032050
Alignment:
Q  167 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagtt 9032050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 10763878 - 10763978
Alignment:
Q  133 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 232  Q
    |||||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| |||||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaa 10763977  T
Q  233 a 233  Q
    |    
T  10763978 a 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 9023528 - 9023415
Alignment:
Q  159 ccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtttaatctcgggctcgc 258  Q
    ||||||| ||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | || |||||    
T  9023528 ccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcgc 9023429  T
Q  259 ctctgcttttatat 272  Q
     | |||||||||||    
T  9023428 ttatgcttttatat 9023415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 9030512 - 9030395
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    ||||||||||||||||||||||||  |||||| ||||||  |||| | ||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  9030512 ccccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaaaagg 9030413  T
Q  226 ccgagaaaggtatgagtt 243  Q
    || |||||  ||||||||    
T  9030412 ccaagaaaaatatgagtt 9030395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 8979389 - 8979319
Alignment:
Q  173 atcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 8979319  T

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Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 8992262 - 8992145
Alignment:
Q  127 cccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||  |||||||||| |||  ||||||||| ||||||||||||||||||||||||||     
T  8992262 cccctcaaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaaaga 8992163  T
Q  226 ccgagaaaggtatgagtt 243  Q
    | |||||||| |||||||    
T  8992162 ctgagaaaggcatgagtt 8992145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 9016611 - 9016490
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaacc---gataagaacagatactacacttgatcttagccaa 221  Q
    ||||||||||||||||||||||||  || |||| ||||||| ||||  ||||||||||||||    ||||||||||||||||||| ||||||||||||||    
T  9016611 ccccctcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataagaacagatactacatttgatcttagccaa 9016512  T
Q  222 aaggccgagaaaggtatgagtt 243  Q
    |||| |||  ||||||||||||    
T  9016511 aaggtcgaataaggtatgagtt 9016490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 8984760 - 8984690
Alignment:
Q  173 atcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||| |||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8984760 atcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 8984690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 8988568 - 8988452
Alignment:
Q  128 ccctcaaaaaagtaatttaatatcgt-gtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggc 226  Q
    ||||||||||||||||||||||| || | |||||||||   |||  |||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||    
T  8988568 ccctcaaaaaagtaatttaatattgttgagaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatcttcgccaaaaggc 8988469  T
Q  227 cgagaaaggtatgagtt 243  Q
    | |||| ||||| ||||    
T  8988468 caagaatggtataagtt 8988452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 6471709 - 6471813
Alignment:
Q  133 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 232  Q
    |||||||||| |||||||| ||||| ||||| | ||  ||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||| ||| ||    
T  6471709 aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaa 6471807  T
Q  233 aggtat 238  Q
    ||||||    
T  6471808 aggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 17225659 - 17225743
Alignment:
Q  129 cctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgat-aagaacagatactacacttgat 212  Q
    ||||||||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||||| || |||||||||||||||||||    
T  17225659 cctcaaaaaagtaatttaatatcgtatgattcattggaccagatatcagttattaaaccgataaaaaacagatactacacttgat 17225743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 35702003 - 35701893
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    |||||||||||||||||  |||||||||||||    |||| |||||||||| |||||||||  |||| |||| |||| |||||||||||||||||||| |    
T  35702003 ccccctcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaaag 35701904  T
Q  226 ccgagaaaggt 236  Q
      |||||||||    
T  35701903 ttgagaaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 17275945 - 17275862
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacactt 209  Q
    |||||||||||| |||||| |||||||||||| ||||||| |||||||| | | ||| ||| |||||||||  |||||||||||    
T  17275945 ccccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 8913074 - 8912989
Alignment:
Q  103 tagcaagctacttaagtggcctc-ccccctcaaaaaagtaatttaatatc--gtgtgaaccattggtccacatatcagatattaaa 185  Q
    |||||||||||| || ||| ||| ||||||||||||||||||||||||||  ||||||  |||||| |||||||| | ||||||||    
T  8913074 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgtgattcattggaccacatattatatattaaa 8912989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 8992349 - 8992294
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacat 80  Q
    |||||||| |||||||||||| |||||||||||| || |||| ||||||||||||||    
T  8992349 aaaaatttgaacttgaattggaggggtgcgccag-cccatgcaatagtgcaacacat 8992294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  202 ctacacttgatcttagccaaaaggccgagaaaggta 237  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 14669587 - 14669819
Alignment:
Q  12 atgaaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagct 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||    
T  14669587 atgaaccagaataaaaatttaaacttgaattggtggggtgcaccagaccaatgctatagtgcaacacattggcgacacacaagaggattagtagcaagct 14669686  T
Q  112 acttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttg 210  Q
    ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14669687 actaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 14669786  T
Q  211 atcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||||||||||||||    
T  14669787 atcttagccaaaaggccgagaaaggtatgagtt 14669819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 14706317 - 14706085
Alignment:
Q  12 atgaaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||| |  ||||||||||||    
T  14706317 atgaaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgttatagtgcaacacatagtcaacacacaagaggattagtagcaagct 14706218  T
Q  112 acttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttg 210  Q
    ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14706217 actaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 14706118  T
Q  211 atcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||||||||||||||    
T  14706117 atcttagccaaaaggccgagaaaggtatgagtt 14706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 33 - 243
Target Start/End: Complemental strand, 14708786 - 14708575
Alignment:
Q  33 aacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccct 131  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||| |||||||||||| ||||| |||| ||||||    
T  14708786 aacttgaattggtggggtgcgccaggccaatgctgtagtgcaacacattgacgacacaagagaagcctaatagcaagctactaaagtgacctctccccct 14708687  T
Q  132 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgaga 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14708686 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14708587  T
Q  232 aaggtatgagtt 243  Q
    ||||||||||||    
T  14708586 aaggtatgagtt 14708575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 14654222 - 14654450
Alignment:
Q  15 aaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctact 114  Q
    ||||||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||||| |||| |||||||| ||| | || |||||||||||||    
T  14654222 aaccagaataaaaatttaa-cttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctact 14654320  T
Q  115 taagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatc 213  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14654321 gaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14654420  T
Q  214 ttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||||||||||||    
T  14654421 ttagccaaaaggccgagaaaggtatgagtt 14654450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 14664013 - 14664241
Alignment:
Q  15 aaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctact 114  Q
    ||||||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||||| |||| |||||||| ||| | || |||||||||||||    
T  14664013 aaccagaataaaaatttaa-cttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctact 14664111  T
Q  115 taagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatc 213  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14664112 gaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14664211  T
Q  214 ttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||||||||||||    
T  14664212 ttagccaaaaggccgagaaaggtatgagtt 14664241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 14683979 - 14683747
Alignment:
Q  12 atgaaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagct 111  Q
    ||||||||||||||||||||||  ||| ||||||||||||| |||  ||||||||||||||||||||||||  ||||||| ||| | |||||||||||||    
T  14683979 atgaaccagaataaaaatttaactttggattggtggggtgcaccaagccaatgctatagtgcaacacattggtgacacacgagaggactagtagcaagct 14683880  T
Q  112 acttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttg 210  Q
    ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14683879 actaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttg 14683780  T
Q  211 atcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||||||||||||||    
T  14683779 atcttagccaaaaggccgagaaaggtatgagtt 14683747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 32 - 243
Target Start/End: Complemental strand, 14716500 - 14716288
Alignment:
Q  32 aaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccc 130  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||| ||| |  ||||||||||||||| |||| ||||| |||||    
T  14716500 aaacttgaattggtggggtgcaccaagccaatgctatagtgcaacacattggcgacacacgagaggattagtagcaagctactaaagttgcctctccccc 14716401  T
Q  131 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14716400 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 14716301  T
Q  231 aaaggtatgagtt 243  Q
    |||||||||||||    
T  14716300 aaaggtatgagtt 14716288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 14652752 - 14652525
Alignment:
Q  15 aaccagaataaaa-atttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctac 113  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||| |||||   |||| | |||||||||||||||||||||    
T  14652752 aaccaaaataaaatatttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctac 14652653  T
Q  114 ttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgat 212  Q
    | || |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14652652 taaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgat 14652553  T
Q  213 cttagccaaaaggccgagaaaggtatga 240  Q
    ||||||||||||||||||||||||||||    
T  14652552 cttagccaaaaggccgagaaaggtatga 14652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 14662543 - 14662316
Alignment:
Q  15 aaccagaataaaa-atttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctac 113  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||| |||||   |||| | |||||||||||||||||||||    
T  14662543 aaccaaaataaaatatttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctac 14662444  T
Q  114 ttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgat 212  Q
    | || |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14662443 taaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgat 14662344  T
Q  213 cttagccaaaaggccgagaaaggtatga 240  Q
    ||||||||||||||||||||||||||||    
T  14662343 cttagccaaaaggccgagaaaggtatga 14662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 14674676 - 14674478
Alignment:
Q  46 ggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaagtaatt 144  Q
    |||||| |||| |||||||||||||||||| ||||||  ||||| | |||||||||||||||||||||| || |||| || |||||||||||||||||||    
T  14674676 ggggtgtgccaaaccaatgctatagtgcaatacattgttgacacccgagaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatt 14674577  T
Q  145 taatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674576 taatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 14674478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 14681794 - 14681596
Alignment:
Q  46 ggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaagtaatt 144  Q
    |||||| |||| |||||||||||||||||| ||||||  ||||| | |||||||||||||||||||||| || |||| || |||||||||||||||||||    
T  14681794 ggggtgtgccaaaccaatgctatagtgcaatacattgttgacacccgagaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatt 14681695  T
Q  145 taatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14681694 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagtt 14681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 14680085 - 14679856
Alignment:
Q  15 aaccagaataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctact 114  Q
    ||||| || ||||||||| |||   |||||| ||||||||||  |||||||| ||||||||| ||||| | |||| ||||||||||||||||||||||||    
T  14680085 aaccaaaaaaaaaatttagactcagattggtcgggtgcgccaagccaatgctgtagtgcaacgcattggcaacactcaagaagcctagtagcaagctact 14679986  T
Q  115 taagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatc 213  Q
     |  |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14679985 aatatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14679886  T
Q  214 ttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||||||||||||    
T  14679885 ttagccaaaaggccgagaaaggtatgagtt 14679856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 38175420 - 38175640
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcc 123  Q
    ||||| || |||| |||||||||||||||||||| |  |||  ||||||||||||||   |||||||  | || || || ||||||||||| | ||||      
T  38175420 aaaaaattgaactagaattggtggggtgcgccaggcttatgtaatagtgcaacacataagcgacacatgataaacccagcagcaagctactgaggtggtt 38175519  T
Q  124 tc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 222  Q
    || |||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38175520 tctccccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 38175619  T
Q  223 aggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||    
T  38175620 aggccgagaaaggtatgagtt 38175640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 28366097 - 28366338
Alignment:
Q  32 aaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccc 130  Q
    |||||| |||||||||| |||||||| ||||||| |||||||||| |||  ||||||||  | |  |||||||||||||||||  | | | ||| |||||    
T  28366097 aaactttaattggtgggatgcgccag-ccaatgcaatagtgcaacgcataaacgacacatgaaagacctagtagcaagctactataatagtctctccccc 28366195  T
Q  131 tcaaaaaagtaatttaatatcgtgtgaaccattggtc-cacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccga 229  Q
    | ||||||||||||||||||||||||| |||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28366196 ttaaaaaagtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 28366295  T
Q  230 gaaaggtatgagtttaatctcgggctcgcctctgcttttatat 272  Q
    |||||||||||||| ||    ||| |||| |||||||||||||    
T  28366296 gaaaggtatgagttgaaagaggggttcgcatctgcttttatat 28366338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 14667007 - 14667221
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaag-tggc 122  Q
    |||||||| | |||| |||||||||||||||||  ||||||||||||||||||||| || | |||| | |||||||| |       ||||| ||  ||||    
T  14667007 aaaaatttgagcttggattggtggggtgcgccaagccaatgctatagtgcaacacactggcaacactcgagaagccttg-------ctactaaaaatggc 14667099  T
Q  123 ctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaa 221  Q
     || ||||||  |||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  14667100 ttctccccctagaaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaa 14667199  T
Q  222 aaggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||||    
T  14667200 aaggccgagaaaggtatgagtt 14667221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 33988208 - 33988067
Alignment:
Q  103 tagcaagctacttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 201  Q
    |||||||||| | || ||||||| |||||| |||||||||||||||||||||||||  |||||  |||||||||||||||||||| ||||||||||||||    
T  33988208 tagcaagctattgaaatggcctctcccccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagata 33988109  T
Q  202 ctacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33988108 ctacacttgatcttagccaaaaggccgagaaaggtatgagtt 33988067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 14676727 - 14676629
Alignment:
Q  145 taatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 14676629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 11872471 - 11872585
Alignment:
Q  123 ctcccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 222  Q
    ||||||| | ||||||||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||    
T  11872471 ctcccccttaaaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaa 11872570  T
Q  223 aggccgagaaaggta 237  Q
    |||||||||||||||    
T  11872571 aggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 37422247 - 37422175
Alignment:
Q  162 ttggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaag 234  Q
    |||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||    
T  37422247 ttggaccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 28698625 - 28698550
Alignment:
Q  168 cacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||||| ||||||||  ||||| || | |||||||| ||||||||||||||||| |||||||| |||||||||    
T  28698625 cacatatcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagtt 28698550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 14703193 - 14703134
Alignment:
Q  127 cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 186  Q
    ||||| |||||  ||||||||||||||||| || |||||||||||||||| |||||||||    
T  14703193 cccctaaaaaatttaatttaatatcgtgtggactattggtccacatatcaaatattaaac 14703134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 10944297 - 10944509
Alignment:
Q  32 aaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctcccccc- 130  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| || |   ||||| |||||||||||||||||||||||| || |||| || ||||     
T  10944297 aaacttgaattggtggggtgcgccaaaccaatgctatagtgcaacgcaatagtgacactcaagaagcctagtagcaagctactaaaatggcttctcccca 10944396  T
Q  131 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgag 230  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  10944397 tcaaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatcttagccaaaaggtcgag 10944496  T
Q  231 aaaggtatgagtt 243  Q
    |||||||||||||    
T  10944497 aaaggtatgagtt 10944509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 126 - 296
Target Start/End: Complemental strand, 44879097 - 44878927
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    |||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44879097 ccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaagg 44878998  T
Q  226 ccgagaaaggtatgagtttaatctcgggctcgcctctgcttttatatccctcgtccactcactctctctct 296  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| || |||||||    
T  44878997 ccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatccctcgtccactctctatctctct 44878927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 126 - 296
Target Start/End: Original strand, 44880824 - 44880994
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    |||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44880824 ccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaagg 44880923  T
Q  226 ccgagaaaggtatgagtttaatctcgggctcgcctctgcttttatatccctcgtccactcactctctctct 296  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| || |||||||    
T  44880924 ccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatatccctcgtccactctctatctctct 44880994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 40054531 - 40054312
Alignment:
Q  22 ataaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtgg 121  Q
    ||||||| || |||| | |||||||||||||||||  |  |||| ||||||||||||||   ||||||  |||||||| | |||||||||| | ||||||    
T  40054531 ataaaaaattgaactagtattggtggggtgcgccaagcttatgcaatagtgcaacacataagcgacacttaagaagcccaatagcaagctattgaagtgg 40054432  T
Q  122 cctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagcca 220  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40054431 cctctccccctcaaaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagcca 40054332  T
Q  221 aaaggccgagaaaggtatga 240  Q
    ||||||||||||||||||||    
T  40054331 aaaggccgagaaaggtatga 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 39 - 288
Target Start/End: Original strand, 41841058 - 41841307
Alignment:
Q  39 aattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctcccccc-tcaaaaa 137  Q
    ||||| ||||||||||||| ||| ||| |||||||||||||| | |||||| | ||||||| | |||||||||| |   ||||| || |||| |||||||    
T  41841058 aattgatggggtgcgccagccca-tgcaatagtgcaacacataggcgacactcgagaagcccaatagcaagctattggggtggcttctccccatcaaaaa 41841156  T
Q  138 agtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 237  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841157 agtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 41841256  T
Q  238 tgagtttaatctcgggctcgcctctgcttttatatccctcgtccactcact 288  Q
    |||||| ||    ||| | || |||||||||||||| | | ||||||||||    
T  41841257 tgagttgaaagatgggttggcttctgcttttatatctcacatccactcact 41841307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 37679953 - 37679757
Alignment:
Q  42 tggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaagt 140  Q
    |||||||||||||||||||| |||||||||||||||||  | ||||||| | || ||| | |||||||||||    |||||||| ||||||||| |||      
T  37679953 tggtggggtgcgccagaccattgctatagtgcaacacaaaggcgacacaga-gaggcccaatagcaagctaccgtggtggcctctccccctcaataaata 37679855  T
Q  141 aatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 238  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679854 aatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 37682258 - 37682057
Alignment:
Q  40 attggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctcccc-cctcaaaaaa 138  Q
    |||||||||| ||||||||||||||| ||||||||||  |  || |||||   |||  |||| |||||||||| ||  |||| ||| |  ||| ||||||    
T  37682258 attggtggggcgcgccagaccaatgcaatagtgcaacgtaaagatgacacttgagagacctaatagcaagctattttggtggactctcatcctaaaaaaa 37682159  T
Q  139 gtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 238  Q
      |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37682158 caaatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtat 37682059  T
Q  239 ga 240  Q
    ||    
T  37682058 ga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 44582965 - 44582870
Alignment:
Q  128 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaa 223  Q
    |||||||||||||||||||||||| |   | ||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44582965 ccctcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 42555090 - 42555193
Alignment:
Q  140 taatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 239  Q
    ||||||||||||||||||  |||||  |||||||||| ||||||||| ||||| ||||||| || ||||||||||||||||||||  | |||||||||||    
T  42555090 taatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattctgcacttgatcttagccaaaagatcaagaaaggtatg 42555189  T
Q  240 agtt 243  Q
    ||||    
T  42555190 agtt 42555193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 42220880 - 42220985
Alignment:
Q  167 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtttaatctcgggctcgcctctgctt 266  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||| ||      ||||||||||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgctt 42220978  T
Q  267 ttatatc 273  Q
    |||||||    
T  42220979 ttatatc 42220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 42092093 - 42092015
Alignment:
Q  167 ccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtttaa 246  Q
    |||||||||||||||||||| |||||||||| ||| ||||||| || |||| ||||||||  ||||||||||||||||||    
T  42092093 ccacatatcagatattaaactgataagaacaaatattacacttaattttag-caaaaggcaaagaaaggtatgagtttaa 42092015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 42872514 - 42872560
Alignment:
Q  197 agatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagtt 42872560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 44583162 - 44583111
Alignment:
Q  134 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 186  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  44583162 aaaaagtaatttaatatcgtgtgtaccatt-gttcacatatcagatattaaac 44583111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 42554655 - 42554709
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagata 180  Q
    ||||||||||||| |||||||||||||||| |  |||||  ||||||||||||||    
T  42554655 ccccctcaaaaaaataatttaatatcgtgtaattcattgacccacatatcagata 42554709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 42872408 - 42872471
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacac 89  Q
    ||||| |||||||| ||||||||||||||| ||| ||| ||| |||||||||||||| ||||||||    
T  42872408 aaaaaattaaactt-aattggtggggtgcgtcagccca-tgcaatagtgcaacacatagacgacac 42872471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 11652298 - 11652502
Alignment:
Q  39 aattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaa 137  Q
    ||||||||||||||||||| ||| ||| |||||||||||||| | |||||| ||||||||| | |||||||||| |  |||||| || ||||||||||||    
T  11652298 aattggtggggtgcgccagccca-tgcaatagtgcaacacataggcgacactcaagaagcccaatagcaagctattggagtggcttctccccctcaaaaa 11652396  T
Q  138 agtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 237  Q
    | |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652397 aataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 11652496  T
Q  238 tgagtt 243  Q
    ||||||    
T  11652497 tgagtt 11652502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 49106428 - 49106639
Alignment:
Q  33 aacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccct 131  Q
    |||| ||||||||||||||||||   |  |||| ||||||||||||||   ||||||| |||||  | |||||||||||||| | ||| | || ||||||    
T  49106428 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacacatgagcgacacataagaaatccagtagcaagctactaaggtgacttctccccct 49106527  T
Q  132 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgaga 231  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49106528 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 49106627  T
Q  232 aaggtatgagtt 243  Q
    ||||||||||||    
T  49106628 aaggtatgagtt 49106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 3461042 - 3461249
Alignment:
Q  33 aacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccct 131  Q
    |||||| |||||||||||| ||||| || |||| |||||||||| ||| |||||||| | |||| || | |||||||||| | || |||| || ||||||    
T  3461042 aacttgtattggtggggtgtgccag-cctatgcaatagtgcaacgcatagacgacactcgagaaacccaatagcaagctattgaaatggcttctccccct 3461140  T
Q  132 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgaga 231  Q
     ||||||||||||||||||||||||| ||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3461141 taaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 3461240  T
Q  232 aaggtatga 240  Q
    |||||||||    
T  3461241 aaggtatga 3461249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 93 - 243
Target Start/End: Original strand, 50077158 - 50077309
Alignment:
Q  93 agaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgata 191  Q
    ||||||| | |||||||||| | ||||||| || |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||    
T  50077158 agaagcccaatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgata 50077257  T
Q  192 agaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077258 agaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 50077309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 49108524 - 49108743
Alignment:
Q  25 aaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcct 124  Q
    |||| ||||||| | ||||||||||||||||   |  |||| ||||||||||||||   ||||||| |||||| | | ||||||||||||    || | |    
T  49108524 aaaaattaaactaggattggtggggtgcgcctagctcatgcaatagtgcaacacatgagcgacacataagaagtccaatagcaagctactgtgatgactt 49108623  T
Q  125 c-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaa 223  Q
    | |||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49108624 ctccccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 49108723  T
Q  224 ggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||    
T  49108724 ggccgagaaaggtatgagtt 49108743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 26998735 - 26998846
Alignment:
Q  128 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggcc 227  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26998735 ccctaaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 26998834  T
Q  228 gagaaaggtatg 239  Q
    ||||||||||||    
T  26998835 gagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 26984668 - 26984773
Alignment:
Q  134 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 233  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26984668 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 26984767  T
Q  234 ggtatg 239  Q
    ||||||    
T  26984768 ggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 48205943 - 48205832
Alignment:
Q  128 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggcc 227  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||   ||||||||||||||||||||| |||||||| ||||||||    
T  48205943 ccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagctaaaaggcc 48205844  T
Q  228 gagaaaggtatg 239  Q
    ||||||||||||    
T  48205843 gagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 21503792 - 21503706
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgat 212  Q
    ||||||||||||| |||||||||||||||||| | ||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  21503792 ccccctcaaaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 41013548 - 41013651
Alignment:
Q  135 aaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaag 234  Q
    |||| |||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||| ||| || |||| |||||| ||||||||||||||||     
T  41013548 aaaaataatttaataccatgtgaacccttggtccacatatcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaaa 41013647  T
Q  235 gtat 238  Q
    ||||    
T  41013648 gtat 41013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 26982646 - 26982549
Alignment:
Q  133 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaa 232  Q
    |||||| | |||||||||| ||| || ||||| ||||||||| ||||| |||||   ||| ||||||| |||||||||||||||||||| ||||||||||    
T  26982646 aaaaaaatgatttaatatcatgtaaatcattgatccacatattagatactaaac---taataacagatgctacacttgatcttagccaagaggccgagaa 26982550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  131 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatacta 204  Q
    |||||||||||||||||||||||| ||  |||| |   |||||||| ||||||||| |||||||||| ||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 49533638 - 49533730
Alignment:
Q  140 taatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 239  Q
    |||||||||||||||||| | ||||    |||||||||||||||     ||||||||||||| | ||||||||||||||| || ||||||||||||||||    
T  49533638 taatttaatatcgtgtgacctattgagtaacatatcagatatta-----ataagaacagata-tgcacttgatcttagcc-aagggccgagaaaggtatg 49533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 54677633 - 54677590
Alignment:
Q  133 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatca 176  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatatca 54677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 34481105 - 34481155
Alignment:
Q  133 aaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatatta 183  Q
    ||||||||||||||||||| |||| | ||||| | ||||||||||||||||    
T  34481105 aaaaaagtaatttaatatcttgtggatcattgattcacatatcagatatta 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 6431957 - 6432010
Alignment:
Q  180 attaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 233  Q
    |||||||  ||||||| |||||||| || ||||||||||||| |||||||||||    
T  6431957 attaaactaataagaagagatactaaacctgatcttagccaataggccgagaaa 6432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  199 atactacacttgatcttagccaaaaggccgagaaagg 235  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 7525185 - 7524968
Alignment:
Q  24 aaaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcc 123  Q
    ||||| |||||||  |||||||||||||||||   || |||| |||||||||| ||| |||||||||  |||| || || ||||||||||| | | ||||    
T  7525185 aaaaaattaaactaaaattggtggggtgcgcctagcccatgcaatagtgcaacgcatggacgacacatgagaaacccagcagcaagctactaaggcggcc 7525086  T
Q  124 tc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaa 222  Q
    || |||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7525085 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 7524986  T
Q  223 aggccgagaaaggtatga 240  Q
    ||||||||||||||||||    
T  7524985 aggccgagaaaggtatga 7524968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 295
Target Start/End: Complemental strand, 3643843 - 3643585
Alignment:
Q  37 tgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaa 135  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||   | |||| | |||| || | |||||||||| |    | |  || |||||| |||    
T  3643843 tgaattggtggggtgcgccag-ccaatgcaatagtgcaacacataagcaacactcgagaaacccaatagcaagctattgtgatagtttctcccccttaaa 3643745  T
Q  136 aaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaagg 235  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643744 aaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagg 3643645  T
Q  236 tatgagtttaatctcgggctcgcctctgcttttatatccctcgtccactcactctctctc 295  Q
    ||||| |||||  |  | ||||| |||| ||||||||||| | |||||||||| ||||||    
T  3643644 tatgaatttaaagtaagtctcgcttctgtttttatatcccacatccactcactttctctc 3643585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 1716444 - 1716562
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccatt-ggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaag 224  Q
    |||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1716444 cccccttaaaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaag 1716543  T
Q  225 gccgagaaaggtatgagtt 243  Q
    |||||||||||||||||||    
T  1716544 gccgagaaaggtatgagtt 1716562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 4103357 - 4103249
Alignment:
Q  128 ccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggcc 227  Q
    |||| ||||||| |||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||     
T  4103357 ccctaaaaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaatgct 4103258  T
Q  228 gagaaaggt 236  Q
    |||||||||    
T  4103257 gagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 5350777 - 5350672
Alignment:
Q  103 tagcaagctacttaagtggcctcc-cccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagata 201  Q
    |||||||||||||  |||| |||  |||||||| |||  |||||||||||||||| |||||||  |||||||||||||||||||| ||||| || |||||    
T  5350777 tagcaagctactttggtggactctacccctcaagaaataaatttaatatcgtgtggaccattgtcccacatatcagatattaaactgataacaatagata 5350678  T
Q  202 ctacac 207  Q
    ||||||    
T  5350677 ctacac 5350672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 16037966 - 16037861
Alignment:
Q  131 tcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgag 230  Q
    ||||||||||||||||||||||| ||| ||||| | |||| ||||| |||||||    ||||||||| |||||||||||||||||||  ||| |||||||    
T  16037966 tcaaaaaagtaatttaatatcgtttgacccattagaccac-tatcaaatattaagataataagaacaaatactacacttgatcttag-aaaacggccgag 16037869  T
Q  231 aaaggtat 238  Q
    ||| ||||    
T  16037868 aaaagtat 16037861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 19261152 - 19261216
Alignment:
Q  169 acatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 233  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||  |||||||| ||||||    
T  19261152 acatatcagatatttaacggataagaacatatattacacttgatcttaatcaaaaggctgagaaa 19261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 13636426 - 13636366
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 186  Q
    ||||||||| ||  |||||||||| |||||| ||| ||| |||||||||||||||||||||    
T  13636426 ccccctcaagaacttaatttaataccgtgtggaccgttgatccacatatcagatattaaac 13636366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 10795840 - 10796000
Alignment:
Q  84 cgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatatt 182  Q
    |||||||  ||||||||| |||||||||| | ||||||| || |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  10795840 cgacacatgagaagcctaatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatatt 10795939  T
Q  183 aaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 243  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10795940 aaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 10796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 10791543 - 10791762
Alignment:
Q  25 aaaatttaaacttgaattggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcct 124  Q
    |||| ||||||| ||||||||||||||  ||  ||  |||| |||||||||| ||    |||||||  ||||||||| |||||||||| | ||||||| |    
T  10791543 aaaagttaaactagaattggtggggtgtacctaactcatgcaatagtgcaacgcacgagcgacacatgagaagcctaatagcaagctattgaagtggctt 10791642  T
Q  125 c-ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaa 223  Q
    | |||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10791643 ctccccctcaaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 10791742  T
Q  224 ggccgagaaaggtatgagtt 243  Q
    ||||||||||||||||||||    
T  10791743 ggccgagaaaggtatgagtt 10791762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 30521440 - 30521242
Alignment:
Q  43 ggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggcctc-ccccctcaaaaaagta 141  Q
    ||||||||||||||| ||||||| |||||||||  ||  ||||||||   |||  || | ||||||||||    ||||| ||| |||||||||||||  |    
T  30521440 ggtggggtgcgccaggccaatgcaatagtgcaaagcaaagacgacacttgagagacccaatagcaagctatagtagtggactctccccctcaaaaaataa 30521341  T
Q  142 atttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 240  Q
    ||| ||||||||||||  |  |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30521340 attgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 13136752 - 13136608
Alignment:
Q  43 ggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctacttaagtggc-ctcccccctcaaaaaagta 141  Q
    |||||||||||||| || |||||||||||||||| ||||  |||||||  ||||||  ||||||||||||||  | |||| |  ||| ||||||||||||    
T  13136752 ggtggggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggctcctccctctcaaaaaagta 13136653  T
Q  142 atttaatatcgtgtgaaccattggtccacatatcagatattaaac 186  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  13136652 atttaatatcgtgtggaccattggtccacatatcagatattaaac 13136608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 8875803 - 8875691
Alignment:
Q  128 ccctcaaaaaagta--atttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    ||||||||||||||  |||||||||||||| | | ||||| |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  8875803 ccctcaaaaaagtataatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttgatcttagccaaaagg 8875704  T
Q  226 ccgagaaaggtat 238  Q
    ||| |||| ||||    
T  8875703 ccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 11333344 - 11333273
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaaca 197  Q
    |||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||    
T  11333344 ccccctcaaaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 10509551 - 10509478
Alignment:
Q  41 ttggtggggtgcgccagaccaatgctatagtgcaacacattgacgacacacaagaagcctagtagcaagctact 114  Q
    |||||||||||| |||  |||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||    
T  10509551 ttggtggggtgctccaagccaatgctatagtgcaacgcattagcgacacacaagaagccgagtagcaagctact 10509478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 21216131 - 21216032
Alignment:
Q  134 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaaggccgagaaa 233  Q
    |||||||||||||||||  |||||  |||||  |||||||| ||||||||||| |||||||| |||| ||| || ||||||||| |||||| || |||||    
T  21216131 aaaaagtaatttaatattttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatcttagtcaaaagaccaagaaa 21216032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 27134625 - 27134511
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    |||||||||||||||||||||||||||| |||  |||| | ||||||||||||||||||||| |||||||||||||||| | ||||||||||  ||||||    
T  27134625 ccccctcaaaaaagtaatttaatatcgtttgactcattagaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaaagg 27134526  T
Q  226 ccgagaaaggtatga 240  Q
    |||| ||||||||||    
T  27134525 ccgaaaaaggtatga 27134511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 8128256 - 8128149
Alignment:
Q  126 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaaccgataagaacagatactacacttgatcttagccaaaagg 225  Q
    ||||||||| |||  |||||||||| |||||| ||||||| |||||||||| |||||||||  | ||||||| ||||||||||| |||||| |||||||     
T  8128256 ccccctcaagaaataaatttaatattgtgtga-ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaaccaaaaga 8128158  T
Q  226 ccgagaaag 234  Q
     ||||||||    
T  8128157 acgagaaag 8128149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  192 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 238  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 5507 - 5450
Alignment:
Q  129 cctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaac 186  Q
    ||||||||||  ||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  5507 cctcaaaaaataaatttaatatcgtgtgaacaattggcccatatatcagatattaaac 5450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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