View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2165_low_1 (Length: 917)

Name: NF2165_low_1
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2165_low_1
NF2165_low_1
[»] chr5 (6 HSPs)
chr5 (16-917)||(18649799-18650699)
chr5 (196-343)||(18650775-18650921)
chr5 (289-323)||(18139382-18139416)
chr5 (233-318)||(19005766-19005852)
chr5 (457-507)||(34903408-34903458)
chr5 (201-250)||(19005221-19005270)
[»] chr3 (9 HSPs)
chr3 (16-342)||(48177975-48178294)
chr3 (198-345)||(15542280-15542428)
chr3 (196-319)||(48178626-48178747)
chr3 (232-343)||(7984009-7984122)
chr3 (57-128)||(21031410-21031481)
chr3 (16-123)||(15541677-15541785)
chr3 (217-348)||(41951589-41951722)
chr3 (215-345)||(13499624-13499756)
chr3 (196-341)||(15541404-15541550)
[»] chr8 (9 HSPs)
chr8 (16-128)||(3461895-3462010)
chr8 (196-319)||(3462519-3462643)
chr8 (201-337)||(29360531-29360668)
chr8 (238-309)||(26067652-26067724)
chr8 (214-343)||(29359605-29359734)
chr8 (462-532)||(10409716-10409786)
chr8 (213-264)||(3461770-3461821)
chr8 (295-343)||(3461714-3461763)
chr8 (292-329)||(28899845-28899882)
[»] chr7 (7 HSPs)
chr7 (234-343)||(39182588-39182698)
chr7 (200-288)||(39197614-39197702)
chr7 (196-343)||(39198580-39198726)
chr7 (478-532)||(28517705-28517759)
chr7 (289-352)||(7875676-7875738)
chr7 (216-352)||(21178092-21178230)
chr7 (212-269)||(31272723-31272780)
[»] chr6 (8 HSPs)
chr6 (213-351)||(18021722-18021861)
chr6 (213-348)||(20385463-20385599)
chr6 (242-309)||(17138481-17138549)
chr6 (197-287)||(20390244-20390333)
chr6 (457-540)||(6067582-6067665)
chr6 (213-339)||(18022039-18022166)
chr6 (233-319)||(20384598-20384685)
chr6 (457-531)||(6420300-6420374)
[»] chr2 (2 HSPs)
chr2 (457-529)||(1900596-1900668)
chr2 (463-532)||(42088434-42088503)
[»] chr4 (5 HSPs)
chr4 (195-288)||(38885022-38885115)
chr4 (233-309)||(16692410-16692487)
chr4 (295-345)||(18582566-18582617)
chr4 (457-532)||(26009751-26009826)
chr4 (212-337)||(23572035-23572161)
[»] scaffold1137 (1 HSPs)
scaffold1137 (457-500)||(820-863)
[»] chr1 (3 HSPs)
chr1 (215-309)||(32771008-32771103)
chr1 (486-531)||(26478007-26478052)
chr1 (487-532)||(35838654-35838699)


Alignment Details
Target: chr5 (Bit Score: 765; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 16 - 917
Target Start/End: Complemental strand, 18650699 - 18649799
Alignment:
16 gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18650699 gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt 18650600  T
116 tatggagtgggaannnnnnnnnnnnnnncattttaaaatccacgtaggcagtctatgtgnnnnnnnnnnnnnnnnn--cgaaacatgtcagctttaatcg 213  Q
    |||||||||||||               |||||||||||||||||||||||||||||||                   ||||||||||||||||||||||    
18650599 tatggagtgggaattttttttttt----cattttaaaatccacgtaggcagtctatgtgaaaaaaaaaaataaaaaaacgaaacatgtcagctttaatcg 18650504  T
214 agtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtga 313  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18650503 agtcaaaatcaaggggaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtga 18650404  T
314 aacttgagggacaaaaa-tgcatttaagcctttattatatcatatgttacttatcctaaacagatagtgaaaatataaattccggtaagctccacaatca 412  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
18650403 aacttgagggacaaaaaatgcatttaagcctttattatatcatatgtttcttatcctaaacagatagtgaaaatataaattccggtaagctccacaatca 18650304  T
413 tcaatactaacaaccattgcctccgccctgaggtagtggttaaggaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtcttt 512  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18650303 tcaatactaacaaccattgcctccgcccagaggtagtggttaaggaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtcttt 18650204  T
513 aaggcacttgttaacatttttcttaataaaatgataatctttagacttttgtaggcactaggcaaacaatagtgatggcacgattttgactcatccacat 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18650203 aaggcacttgttaacatttttcttaataaaatgataatctttagacttttgtaggcactaggcaaacaatagtgatggcacgattttgactcatccacat 18650104  T
613 ttttctatctacagaatatgaacattcaattaagatacttaaatcatgggactcgaattttccagatgtcttccagatccataatagtagaactgaactg 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18650103 ttttctatctacagaatatgaacattcaattaagatacttaaatcatgggactcgaattttccagatgtcttccagatccataatagtagaactgaactg 18650004  T
713 gtcaaggggcattacctgatgccatgccatcacagctaagcagacccaaggcctttatttaccaagacttttttgcctagggtgttccattttccttgga 812  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
18650003 gtcaaggggcattacttgatgccatgccatcacagctaagcagacccaaggtctttatttaccaagacttttttgcctagggtgttccattttccttgga 18649904  T
813 gcacttaatgccaatgttagtaaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgat 912  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649903 gcacttaatgccaatgttagtaaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgat 18649804  T
913 ttgtt 917  Q
    |||||    
18649803 ttgtt 18649799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 18650775 - 18650921
Alignment:
196 acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttg-ggggccaaatgtgctattttaaaaataggggggc 294  Q
    ||||||||||||| | |||||| ||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||      
18650775 acatgtcagctttgaccgagtcgaaatcaaggg-gctcatggttttgcaaaggggctgaaacttgtggggccaaatgtgctattttgaaaataggggg-- 18650871  T
295 caaaatcgcaagtttgtgaaactt-gagggacaaaaatgcatttaagcct 343  Q
    |||||| ||||||||||||||||| | ||| ||||| ||||||| |||||    
18650872 caaaattgcaagtttgtgaaacttggggggccaaaagtgcatttgagcct 18650921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 18139382 - 18139416
Alignment:
289 gggggccaaaatcgcaagtttgtgaaacttgaggg 323  Q
    |||||||||||||||||||||||||||||||||||    
18139382 gggggccaaaatcgcaagtttgtgaaacttgaggg 18139416  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 19005766 - 19005852
Alignment:
233 catggttttgcaaaggggctgaaacttgg-gggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaactt 318  Q
    |||||| ||||||||||| ||||||||   |||  ||| || ||||||| ||| | |||||||||||||||||||||||||||||||    
19005766 catggtgttgcaaagggggtgaaacttaaaggggaaaaagttctattttcaaacttggggggccaaaatcgcaagtttgtgaaactt 19005852  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 507
Target Start/End: Original strand, 34903408 - 34903458
Alignment:
457 gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtg 507  Q
    ||||||||||||| ||||| |||||||||| |||||| |||||||||||||    
34903408 gaatgcacaattttcaagataaagttactactttaagtttcttatcaagtg 34903458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 19005270 - 19005221
Alignment:
201 tcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaagggg 250  Q
    |||||||| || ||||||||||||||||  ||||||||||||||||||||    
19005270 tcagctttgattgagtcaaaatcaagggggaccatggttttgcaaagggg 19005221  T

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Target: chr3 (Bit Score: 124; Significance: 3e-63; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 48178294 - 48177975
Alignment:
16 gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
48178294 gaagaaaaatggtgtttgagaagaaggatgaaccagatttatgagtgaaggaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggt 48178195  T
116 tatggagtgggaannnnnnnnnnnnnnncattttaaaatccacgtaggcagtctatgtgnnnnnnnnnnnnnnnnncgaaacatgtcagctttaatcgag 215  Q
    || |||||| |||               |||| ||||||||||||||||||||||||||                 ||  ||||||||| |||||  |||    
48178194 taaggagtg-gaaattttatttatttttcattctaaaatccacgtaggcagtctatgtggaaaaaaaaa-------cgcgacatgtcagttttaactgag 48178103  T
216 tcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggc-caaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaa 314  Q
    ||||||| ||||| | ||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||||| ||||||| |||| |||||||    
48178102 tcaaaattaagggga-ccatggttttgcaaaggggttgaaacttggggggtcaaatgtgctattttgaaaatagggggggcaaaatcacaagcttgtgaa 48178004  T
315 actt-gagggacaaaaatgcatttaagcc 342  Q
    |||| ||||| ||||| ||||||||||||    
48178003 acttggagggccaaaagtgcatttaagcc 48177975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 198 - 345
Target Start/End: Original strand, 15542280 - 15542428
Alignment:
198 atgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaa 297  Q
    ||||||| ||| | |||||||||||||| || ||||||| ||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||| ||||    
15542280 atgtcagttttgaccgagtcaaaatcaaagggaaccatgcttttgcaaaggggcataaacttgagggccaaatgtgctattttcaaaatagggggaccaa 15542379  T
298 aatcgcaagtttgtgaaacttg-agggacaaaaatgcatttaagccttt 345  Q
    ||||||||||||   ||||||| |||| ||||| ||||||||| |||||    
15542380 aatcgcaagttttgcaaacttgaaggggcaaaagtgcatttaaaccttt 15542428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 48178626 - 48178747
Alignment:
196 acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggcc 295  Q
    |||||| |||||| | || ||||||||||||||   |||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||| |    
48178626 acatgttagctttgaccgggtcaaaatcaaggggg-ccatggttttacaaaggggctgaaacttggggaccaaatgagctattttgaaaatagggggg-c 48178723  T
296 aaaatcgcaagtttgtgaaacttg 319  Q
    ||||| ||||||||||||||||||    
48178724 aaaattgcaagtttgtgaaacttg 48178747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 232 - 343
Target Start/End: Complemental strand, 7984122 - 7984009
Alignment:
232 ccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaactt--gagggacaaaa 329  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||| |||| ||||||||||||  | ||| |||||    
7984122 ccatggtttggcaaaggggctgaaacttgggggccgaatgtgctattttgaaaatagggggcctaaaattgcaattttgtgaaacttaggtgggccaaaa 7984023  T
330 atgcatttaagcct 343  Q
     |||||||||||||    
7984022 ttgcatttaagcct 7984009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 21031481 - 21031410
Alignment:
57 tgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatggttatggagtgggaa 128  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||    
21031481 tgagtgaagaaggaggatggagatttatgtgtgaagaagaatgatgaaggagaaatggttatggagtgggaa 21031410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 15541785 - 15541677
Alignment:
16 gaagaaaaatggtgtttgagaagaaggat-gaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaatgg 114  Q
    |||||||||||||  | |||| |||| || |||||| ||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||| ||| ||    
15541785 gaagaaaaatggttatggagatgaagaatagaaccatatttatgagtgaagaaggaggatgcagatttgtgtatgaaaaaagaggatgaaggacaaaggg 15541686  T
115 ttatggagt 123  Q
    | |||||||    
15541685 taatggagt 15541677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 41951589 - 41951722
Alignment:
217 caaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaa 315  Q
    ||||||||||||  |||||||||||||||||||| ||||||||  || | |||| |||||||||| ||| | |||||  ||||||||||| ||| || ||    
41951589 caaaatcaagggggaccatggttttgcaaagggggtgaaacttaaggaggcaaaagtgctattttcaaacttgggggatcaaaatcgcaaatttatggaa 41951688  T
316 cttgag-ggacaaaaatgcatttaagcctttatt 348  Q
    |||| | || ||||||||||||| | ||||||||    
41951689 cttgggaggtcaaaaatgcattttaacctttatt 41951722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 13499756 - 13499624
Alignment:
215 gtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggggg-ccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtga 313  Q
    ||||||||||||||   || |||||||| ||||||| ||||||||||||| ||||| |||||||||| ||| | || ||| |||||||||||||||   |    
13499756 gtcaaaatcaaggggggccctggttttgaaaagggggtgaaacttggggggccaaaagtgctattttcaaacttggagggtcaaaatcgcaagttttaca 13499657  T
314 aactt-gagggacaaaaatgcatttaagccttt 345  Q
    ||||| | ||| ||||| ||||||| |||||||    
13499656 aacttggggggccaaaagtgcattttagccttt 13499624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 341
Target Start/End: Complemental strand, 15541550 - 15541404
Alignment:
196 acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggc 294  Q
    ||||||||||||| | | ||| |||||||||||    |||||||||||||||| |||||||||| |||||| ||| |||||||||   ||||| ||| ||    
15541550 acatgtcagctttgaccaagtaaaaatcaaggg-gggcatggttttgcaaaggagctgaaacttggggggcaaaaagtgctatttccgaaataagggagc 15541452  T
295 caaaatcgcaagtttgtgaaacttg-agggacaaaaatgcatttaagc 341  Q
    |||||| | ||||||   ||||||| |||| |||||||||||||||||    
15541451 caaaattgtaagttttgcaaacttgaagggccaaaaatgcatttaagc 15541404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 3462010 - 3461895
Alignment:
16 gaagaaaaatggtgtttgagaagaag---gatgaaccagatttatgagtgaagaaggaggatgcagatttgtgtgtgaagaagaaggatgaaggagaaat 112  Q
    ||||||||||||||||||||||||||   ||||||| |||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||    
3462010 gaagaaaaatggtgtttgagaagaagaaggatgaactagatttatgagtgaagaaagaggatgcatatttgtgcgtgaagaaaaaggatgaaggagaaat 3461911  T
113 ggttatggagtgggaa 128  Q
    ||||||||||||||||    
3461910 ggttatggagtgggaa 3461895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 3462519 - 3462643
Alignment:
196 acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggggg--ccaaatgtgctattttaaaaatagggggg 293  Q
    ||||||||||||| | |||||||||||||||||  | |||||||||| ||||| |||||||||||||||  |||||| ||||||||| |||||| |||||    
3462519 acatgtcagctttgaccgagtcaaaatcaagggggatcatggttttgtaaaggagctgaaacttggggggaccaaatatgctattttgaaaata-ggggg 3462617  T
294 ccaaaatcgcaagtttgtgaaacttg 319  Q
    |||||||||||||| |||||||||||    
3462618 ccaaaatcgcaagtctgtgaaacttg 3462643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 337
Target Start/End: Original strand, 29360531 - 29360668
Alignment:
201 tcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaa 299  Q
    |||||||| | |||||||||||||||||  ||||||||||||||||||   ||||||||  ||||  ||| ||| |||||| ||| |  |||||| ||||    
29360531 tcagctttgaccgagtcaaaatcaagggggaccatggttttgcaaaggcagtgaaacttaagggggaaaaagtgttattttcaaact-tgggggctaaaa 29360629  T
300 tcgcaagtttgtgaaacttga-gggacaaaaatgcattt 337  Q
    |||||||||||||||||| || ||| ||||| |||||||    
29360630 tcgcaagtttgtgaaactagacgggccaaaagtgcattt 29360668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 26067652 - 26067724
Alignment:
238 ttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagttt 309  Q
    |||||| || ||| |||||||| |||||||||   ||||||||| ||||||||||||||||||||||||||||    
26067652 ttttgcgaaagggttgaaacttagggggccaataatgctattttgaaaataggggggccaaaatcgcaagttt 26067724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 29359734 - 29359605
Alignment:
214 agtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtg 312  Q
    ||||||||| ||||| | ||||||||||||||||||| ||||||||  ||||  ||| |||||||||| ||| |  |||||| |||||||||||||||||    
29359734 agtcaaaatgaagggga-ccatggttttgcaaagggggtgaaacttaaggggaaaaaagtgctattttcaaact-tgggggctaaaatcgcaagtttgtg 29359637  T
313 aaacttgag-ggacaaaaatgcatttaagcct 343  Q
    | ||||| | || ||||| ||||||| |||||    
29359636 acacttgggtggccaaaagtgcattttagcct 29359605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 462 - 532
Target Start/End: Original strand, 10409716 - 10409786
Alignment:
462 cacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt 532  Q
    ||||| || ||||| |||||| ||||||||| | |||||||||||||||| | |||||||||||| |||||    
10409716 cacaagtttcaagataaagtttctattttaaacctcttatcaagtgtcttaagggcacttgttaatatttt 10409786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 3461821 - 3461770
Alignment:
213 gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggggg 264  Q
    ||||||||||||||||    ||||||||||||||||| ||||||||||||||    
3461821 gagtcaaaatcaaggggggtcatggttttgcaaagggactgaaacttggggg 3461770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 3461763 - 3461714
Alignment:
295 caaaatcgcaagtttgtgaaactt-gagggacaaaaatgcatttaagcct 343  Q
    |||||||||||||||||||||||| || || ||||| |||||||||||||    
3461763 caaaatcgcaagtttgtgaaacttggatggccaaaagtgcatttaagcct 3461714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 28899845 - 28899882
Alignment:
292 ggccaaaatcgcaagtttgtgaaacttgagggacaaaa 329  Q
    |||||||||||||||||||||||||||| ||| |||||    
28899845 ggccaaaatcgcaagtttgtgaaacttgggggccaaaa 28899882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 7e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 39182698 - 39182588
Alignment:
234 atggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaacttgagggac-aaaaat 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||| | |||| |    
39182698 atggttttgcaaaggggctgaaacttcgggggccaaatgtgctattttgaaaatag-ggggtcaaaatcacaagtttgtgaaacttgaggggctaaaagt 39182600  T
332 gcatttaagcct 343  Q
    ||||||||||||    
39182599 gcatttaagcct 39182588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 39197702 - 39197614
Alignment:
200 gtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaatag 288  Q
    ||||||||| | ||||| ||||||||||||  | |||||||||||| ||| || ||||||||||||||||  | ||||||| |||||||    
39197702 gtcagctttgaccgagttaaaatcaagggaggcaatggttttgcaatgggcctaaaacttgggggccaaaaatactattttcaaaatag 39197614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 39198580 - 39198726
Alignment:
196 acatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttggg-ggccaaatgtgctattttaaaaataggggggc 294  Q
    |||||||| |||| | |||||||||||||| ||| | |||||||||| ||||||| | ||| ||||| ||||||| |||||||||  |||| ||||||      
39198580 acatgtcatctttgaccgagtcaaaatcaa-ggagatcatggttttgtaaaggggttaaaatttgggaggccaaaagtgctatttctaaaacagggggat 39198678  T
295 caaaatcgcaagtttgtgaaacttgagggacaaaaatgcatttaagcct 343  Q
    ||||||||||| ||||  ||||||| ||| ||||| || |||| |||||    
39198679 caaaatcgcaactttg-aaaacttgggggccaaaagtgtattttagcct 39198726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 532
Target Start/End: Complemental strand, 28517759 - 28517705
Alignment:
478 aagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt 532  Q
    ||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||||||    
28517759 aagttgctactttaagctttttatcaagtgtccttatggcacttgttaacatttt 28517705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 7875738 - 7875676
Alignment:
289 gggggccaaaatcgcaagtttgtgaaacttgagggacaaaaatgcatttaagcctttattatat 352  Q
    |||| ||||||||||||| ||||||||| |||||| | ||| |||| |||||||||||||||||    
7875738 ggggaccaaaatcgcaagattgtgaaacatgaggg-ccaaactgcaattaagcctttattatat 7875676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 21178230 - 21178092
Alignment:
216 tcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaa 314  Q
    |||||||||||||  || ||| |||| |||||||| ||||||||  |||| ||||  ||||||||| |||   |||||| |||||||| |||||| ||||    
21178230 tcaaaatcaagggggactatgatttttcaaaggggatgaaacttaagggggcaaaaatgctatttttaaacatggggggtcaaaatcgtaagtttatgaa 21178131  T
315 acttgag-ggacaaaaatgcatttaagcctttattatat 352  Q
    ||||| | || |||||||| | || |||||||| |||||    
21178130 acttgggaggtcaaaaatgtactttagcctttaatatat 21178092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 31272723 - 31272780
Alignment:
212 cgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaa 269  Q
    ||||||||||||| ||| | |||| |||||||||| | | ||||||||||||||||||    
31272723 cgagtcaaaatcacggggatccattgttttgcaaaagtggtgaaacttgggggccaaa 31272780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 213 - 351
Target Start/End: Complemental strand, 18021861 - 18021722
Alignment:
213 gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaat-gtgctattttaaaaataggggggccaaaatcgcaagtttgt 311  Q
    |||||||||| |||||  |||||||||||||||||||| |||||||||||||  |||| |||||||||| ||||||||||| ||||||| ||||||||      
18021861 gagtcaaaatgaagggggaccatggttttgcaaagggg-tgaaacttggggggtaaatagtgctatttttaaaatagggggaccaaaattgcaagttttg 18021763  T
312 gaaacttgaggga-caaaaatgcatttaagcctttattata 351  Q
     |||||| ||||| ||||| |||||||||||| | ||||||    
18021762 aaaacttaagggaccaaaagtgcatttaagccataattata 18021722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 213 - 348
Target Start/End: Original strand, 20385463 - 20385599
Alignment:
213 gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttg-ggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgt 311  Q
    |||||||||||||||| | |||||||||| |||||||| ||||||||  |||| |||| |||||||||| ||| | | ||||||||||||  ||||||||    
20385463 gagtcaaaatcaagggga-ccatggttttacaaagggggtgaaactttagggggcaaaagtgctattttcaaatttgaggggccaaaatcataagtttgt 20385561  T
312 gaaactt-gagggacaaaaatgcatttaagcctttatt 348  Q
    ||||||| | ||| ||||| ||||||| |||| |||||    
20385562 gaaacttggggggccaaaagtgcattttagccattatt 20385599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 17138481 - 17138549
Alignment:
242 gcaaaggggctgaaacttgggggccaaat-gtgctattttaaaaataggggggccaaaatcgcaagttt 309  Q
    |||||| |||| ||||||||||| | ||| |||||||||| ||||||||||||||||||| ||||||||    
17138481 gcaaagaggctaaaacttgggggaccaatagtgctattttgaaaataggggggccaaaattgcaagttt 17138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 20390333 - 20390244
Alignment:
197 catgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaatgtgctattttaaaaata 287  Q
    |||||||||||| ||||||||||||| || |||   || |||||||||||||| |||||||||||| | |||  |||||||||| ||||||    
20390333 catgtcagctttgatcgagtcaaaattaaaggaggtcaaggttttgcaaagggtctgaaacttgggag-caatagtgctattttgaaaata 20390244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 540
Target Start/End: Original strand, 6067582 - 6067665
Alignment:
457 gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttttcttaata 540  Q
    |||| ||||||||  |||| ||||||  || |||| | ||||||||||| ||| ||| ||||||||||| ||||||||||||||    
6067582 gaatacacaatttctaagataaagttgatactttatgtttcttatcaagggtcgttagggcacttgttagcatttttcttaata 6067665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 18022039 - 18022166
Alignment:
213 gagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggccaaat-gtgctattttaaaaataggggggccaaaatcgcaagtttgt 311  Q
    ||||||||||||||||    |||||||||||||| | | ||||||||| |||   ||| |||||||||| ||||||| | || |||||||||||||||      
18022039 gagtcaaaatcaaggggggtcatggttttgcaaatgaggtgaaacttgaggggttaatagtgctattttcaaaatagagaggtcaaaatcgcaagttttg 18022138  T
312 gaaacttgagggacaaaaatgcatttaa 339  Q
     |||||||  || ||||| |||||||||    
18022139 aaaacttggaggtcaaaagtgcatttaa 18022166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 20384685 - 20384598
Alignment:
233 catggttttgcaaaggggctgaaacttg-ggggccaaatgtgctattttaaaaataggggggccaaaatcgcaagtttgtgaaacttg 319  Q
    |||||||||||||| ||| ||||||||  |||| |||| |||||||||| ||| | || || | |||||| |||||||||||||||||    
20384685 catggttttgcaaatggggtgaaacttaaggggtcaaaagtgctattttcaaatttggaggactaaaatcacaagtttgtgaaacttg 20384598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 531
Target Start/End: Original strand, 6420300 - 6420374
Alignment:
457 gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacattt 531  Q
    ||||||||| ||| ||| | |||||||||| |||||| ||||||||||||| | | | ||||||||||| |||||    
6420300 gaatgcacattttccaaaataaagttactactttaagtttcttatcaagtgccctaagggcacttgttagcattt 6420374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 1900596 - 1900668
Alignment:
457 gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacat 529  Q
    |||||||||||||  |||| ||| |||||| |||||||||||||||||||||| ||| |||||||||||||||    
1900596 gaatgcacaatttctaagataaaattactactttaagcttcttatcaagtgtccttagggcacttgttaacat 1900668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 532
Target Start/End: Complemental strand, 42088503 - 42088434
Alignment:
463 acaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt 532  Q
    ||||||| ||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||| ||||||    
42088503 acaatttccaagataaagttactattttaagtttcttatctaatgtctttagggcacttgttagcatttt 42088434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 38885022 - 38885115
Alignment:
195 aacatgtcagctttaatcgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaactt-gggggccaaatgtgctattttaaaaatag 288  Q
    |||||||||||||| | |||||||||||||||||  | |||||||||||||||| ||| |||||| |||||||||| |||||||||  |||||||    
38885022 aacatgtcagctttcaccgagtcaaaatcaaggg-gatcatggttttgcaaaggagctaaaacttagggggccaaaagtgctatttccaaaatag 38885115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 16692487 - 16692410
Alignment:
233 catggttttgcaaaggggctgaaacttggg-ggccaaatgtgctattttaaaaataggggggccaaaatcgcaagttt 309  Q
    |||||||||||||||||| ||||||||||| |  |||||||| |||||| ||| |   ||||||||||||||||||||    
16692487 catggttttgcaaagggggtgaaacttgggagatcaaatgtgatattttcaaatttaaggggccaaaatcgcaagttt 16692410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 18582617 - 18582566
Alignment:
295 caaaatcgcaagtttgtgaaacttgaggga-caaaaatgcatttaagccttt 345  Q
    |||||||||||||||||||||||||||  | ||||||||||||| |||||||    
18582617 caaaatcgcaagtttgtgaaacttgagaaaccaaaaatgcattttagccttt 18582566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 532
Target Start/End: Original strand, 26009751 - 26009826
Alignment:
457 gaatgcacaatttgcaagacaaagttactattttaagcttcttatcaagtgtctttaaggcacttgttaacatttt 532  Q
    |||| ||||| || ||||| ||||||  || |||||  ||||||||||||||||| | ||||||||||||||||||    
26009751 gaatacacaaattccaagataaagtttttactttaaatttcttatcaagtgtcttaagggcacttgttaacatttt 26009826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 337
Target Start/End: Original strand, 23572035 - 23572161
Alignment:
212 cgagtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggcc-aaatgtgctattttaaaaataggggggccaaaatcgcaagtttg 310  Q
    ||||||||||| |||||   | ||||| | ||||||||| |||||||||||||   ||| ||| |||||| ||| | ||| || ||||||||||||||||    
23572035 cgagtcaaaattaaggggggctatggtctcgcaaagggggtgaaacttggggggttaaaagtgttatttttaaacttgggaggtcaaaatcgcaagtttg 23572134  T
311 tgaaacttgagggacaaaaatgcattt 337  Q
      |||||||  || |||||||||||||    
23572135 aaaaacttgcagggcaaaaatgcattt 23572161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 500
Target Start/End: Complemental strand, 863 - 820
Alignment:
457 gaatgcacaatttgcaagacaaagttactattttaagcttctta 500  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||    
863 gaatgcacaatttccaagacaaagttactactttaagtttctta 820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 32771103 - 32771008
Alignment:
215 gtcaaaatcaagggaaaccatggttttgcaaaggggctgaaacttgggggc-caaatgtgctattttaaaaataggggggccaaaatcgcaagttt 309  Q
    ||||||||||||||   | || |||||||||||||| |||||||| ||||  |||| |||||||||| ||| | ||| || |||||||||||||||    
32771103 gtcaaaatcaaggggcgctatagttttgcaaagggggtgaaacttaggggttcaaaagtgctattttcaaacttgggaggtcaaaatcgcaagttt 32771008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 26478052 - 26478007
Alignment:
486 attttaagcttcttatcaagtgtctttaaggcacttgttaacattt 531  Q
    |||||||| |||||||||||||| |||| || ||||||||||||||    
26478052 attttaagtttcttatcaagtgtttttagggtacttgttaacattt 26478007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 35838654 - 35838699
Alignment:
487 ttttaagcttcttatcaagtgtctttaaggcacttgttaacatttt 532  Q
    |||||||||| ||| |||||||||| ||||||||||||| ||||||    
35838654 ttttaagctttttaacaagtgtcttaaaggcacttgttagcatttt 35838699  T

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