View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2165_low_10 (Length: 328)

Name: NF2165_low_10
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2165_low_10
NF2165_low_10
[»] chr8 (6 HSPs)
chr8 (1-310)||(32709643-32709952)
chr8 (1-309)||(32703930-32704242)
chr8 (1-308)||(7297866-7298173)
chr8 (1-112)||(32627903-32628014)
chr8 (1-131)||(7293569-7293699)
chr8 (234-308)||(32627707-32627781)
[»] chr6 (2 HSPs)
chr6 (4-182)||(21943681-21943859)
chr6 (4-151)||(20115800-20115947)
[»] chr4 (1 HSPs)
chr4 (1-131)||(5811529-5811659)
[»] chr3 (1 HSPs)
chr3 (1-298)||(27736681-27736978)
[»] chr5 (1 HSPs)
chr5 (3-64)||(8028972-8029033)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 32709952 - 32709643
Alignment:
Q  1 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709952 caattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 32709853  T
Q  101 atctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgcacggtgaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709852 atctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgcacggtgaa 32709753  T
Q  201 acagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709752 acagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctctt 32709653  T
Q  301 acagccttat 310  Q
    ||||||||||    
T  32709652 acagccttat 32709643  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 32704242 - 32703930
Alignment:
Q  1 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 100  Q
    |||||||||| ||||||||||||| ||| |||||||||||||| | | | |||||   ||||||||| ||||||||| ||||||||||| | |||||| |    
T  32704242 caattgcagatttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataa 32704143  T
Q  101 atctcccgaataca----aggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgcacgg 196  Q
    |||||| ||||| |    ||||||| ||||||||| | || || ||||||||||| ||  | ||||| || || || |  |||||| | |  || || |     
T  32704142 atctcctgaatatatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctacaggc 32704043  T
Q  197 tgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcc 296  Q
    |||||  ||||| |||||||  |  || ||  | | ||| ||||| ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  32704042 tgaaatggaaaccgaaatggtaccttgctacttctttggggttcccggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcc 32703943  T
Q  297 tcttacagcctta 309  Q
    ||||| |||||||    
T  32703942 tcttatagcctta 32703930  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 7298173 - 7297866
Alignment:
Q  1 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 100  Q
    |||||||||| || ||||| |||||||| ||||||||||||||||||||||||||  |||||| ||| ||||| |||||||| | | | ||||| |||      
T  7298173 caattgcagatttaggttgttcttctggaccaaacactttgtttgtggtatcagatattatcatggttgtggagaagctttgccaacaattgaaccattc 7298074  T
Q  101 atctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgcacggtgaa 200  Q
    ||||||||| |||||| | || || || ||| |  | || || |||||||| ||||| ||||  || ||||| ||||| ||| ||| |||||| | ||||    
T  7298073 atctcccgagtacaagatattttttaatgatgtttctggaaatgacttcaacaacatatttaagtcacttgacaactttaaagagaaactgcaagatgaa 7297974  T
Q  201 acagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctctt 300  Q
    |   ||||| |||||  |   || ||  | | ||| |||||||||||||||||| | ||  |||||||||||| |||||| |||||  | |||||||||     
T  7297973 atcaaaactaaaatgagttcttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattcattcctctc 7297874  T
Q  301 acagcctt 308  Q
    ||||||||    
T  7297873 acagcctt 7297866  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 32628014 - 32627903
Alignment:
Q  1 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 100  Q
    ||||||||||||| ||||||||||||||  ||||||||||||| ||| | | |||  ||||||| || |||||||||||||||||| |  | |||||| |    
T  32628014 caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa 32627915  T
Q  101 atctcccgaata 112  Q
    ||||||||||||    
T  32627914 atctcccgaata 32627903  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 7293699 - 7293569
Alignment:
Q  1 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 100  Q
    ||||||||||  ||||||| |||| ||| | ||||||||||| |||||| |||||| | |||| ||| ||||| |||||||| | | | |||||  |||     
T  7293699 caattgcagatctgggttgttcttgtggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgc 7293600  T
Q  101 atctcccgaatacaaggtcttcttgaacgat 131  Q
    |||||||||||||||| |||| || ||||||    
T  7293599 atctcccgaatacaagatcttttttaacgat 7293569  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 32627781 - 32627707
Alignment:
Q  234 ggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagcctt 308  Q
    |||||||||||||| ||  |||| || |||||||||  |||||||||||||||||| ||||||||||| ||||||    
T  32627781 ggagttcctggttcctttcatggtagaatttttcctcttcaaagtttgcattttgttcattcctcttatagcctt 32627707  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 21943859 - 21943681
Alignment:
Q  4 ttgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatc 103  Q
    |||||||||||||||| |||||||| | ||| |||||||| ||| | || ||  |||| || || |||||||||||||||| ||||||||||||||||||    
T  21943859 ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc 21943760  T
Q  104 tcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaa 182  Q
    ||||||||| ||||| || ||||||||| | ||||| ||||| ||||| ||| | ||||| || ||||| | |||||||    
T  21943759 tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaa 21943681  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 20115800 - 20115947
Alignment:
Q  4 ttgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatc 103  Q
    |||||||||| ||||||||||| || |||||||| ||||| ||| | |||||| |||||||||| |||||||||||||||  ||| ||||||||||||||    
T  20115800 ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc 20115899  T
Q  104 tcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaa 151  Q
    ||| |||||  | ||||  ||||||||| |  |||| |||||||||||    
T  20115900 tcctgaatatgatgtctctttgaacgatctatccggaaacgacttcaa 20115947  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 5811659 - 5811529
Alignment:
Q  1 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 100  Q
    |||||||||||||||||||||||| ||| ||||||||||| || ||| | || ||| |||||||||| || |||||||||||||||||  | |||||| |    
T  5811659 caattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataa 5811560  T
Q  101 atctcccgaatacaaggtcttcttgaacgat 131  Q
    |||||||||||| || ||||| |||||||||    
T  5811559 atctcccgaatataaagtctttttgaacgat 5811529  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 27736978 - 27736681
Alignment:
Q  1 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||| ||||||| |  |||||||| ||||||| || |    ||||| |    
T  27736978 caattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatcatcataa 27736879  T
Q  101 atctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgcacggtgaa 200  Q
    |||||| ||||| || || || ||||| ||| | || || || |||||||| ||| | || |  || ||||| | ||||||| ||| ||| |  | ||||    
T  27736878 atctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaa 27736779  T
Q  201 acagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctc 298  Q
    |  |||||| |||| |  | ||| ||  | | ||||||||||||||| || |||||||| ||||||||  || | |||||||||||||| ||||||||    
T  27736778 atggaaactaaaataggcccgtgctacttctatggagttcctggttcattttatggcagaatttttccagataatagtttgcattttgttcattcctc 27736681  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 8028972 - 8029033
Alignment:
Q  3 attgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaa 64  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||| |||||||    
T  8028972 attgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaa 8029033  T

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