View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2165_low_17 (Length: 212)

Name: NF2165_low_17
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2165_low_17
NF2165_low_17
[»] chr4 (13 HSPs)
chr4 (28-196)||(1545716-1545884)
chr4 (44-111)||(553507-553574)
chr4 (42-119)||(1600439-1600516)
chr4 (42-132)||(8187093-8187183)
chr4 (42-110)||(1513409-1513477)
chr4 (40-110)||(7307889-7307959)
chr4 (42-102)||(8184032-8184092)
chr4 (42-110)||(12121459-12121527)
chr4 (42-156)||(1524488-1524602)
chr4 (44-110)||(1548428-1548494)
chr4 (42-82)||(546970-547010)
chr4 (44-96)||(644873-644925)
chr4 (42-82)||(1519144-1519184)
[»] chr5 (3 HSPs)
chr5 (41-132)||(41889555-41889646)
chr5 (47-132)||(41901542-41901627)
chr5 (41-132)||(32267482-32267573)
[»] chr8 (6 HSPs)
chr8 (29-157)||(18315262-18315390)
chr8 (41-132)||(27922515-27922606)
chr8 (44-98)||(28246299-28246353)
chr8 (44-99)||(21235598-21235653)
chr8 (42-82)||(17636403-17636443)
chr8 (42-110)||(34936165-34936233)
[»] chr3 (3 HSPs)
chr3 (42-133)||(51120895-51120986)
chr3 (29-98)||(1657292-1657361)
chr3 (42-110)||(51764442-51764510)
[»] chr6 (6 HSPs)
chr6 (29-98)||(11936264-11936333)
chr6 (29-98)||(11948244-11948313)
chr6 (42-114)||(6432186-6432258)
chr6 (44-82)||(12102323-12102361)
chr6 (29-82)||(6423274-6423327)
chr6 (42-114)||(6410031-6410103)
[»] chr2 (1 HSPs)
chr2 (42-114)||(32785774-32785846)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 1545884 - 1545716
Alignment:
Q  28 ttgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaaga 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1545884 ttgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttatataataacaaaga 1545785  T
Q  128 gttgtcatataattttgcaactgttattggtatattgtgagtgcgtcacatagaagggagtgaaagatg 196  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1545784 attgtcatataattttgcaactgttattggtatattgtgagtgcgtcacatagaagggagtgaaagatg 1545716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 553574 - 553507
Alignment:
Q  44 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactt 111  Q
    |||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcactt 553507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 1600516 - 1600439
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaat 119  Q
    |||||||||| |||||| |||||||||||||||||||||||  | |||||| ||||| |||||| |||| ||||||||    
T  1600516 aatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactctataaaat 1600439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 8187093 - 8187183
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 132  Q
    |||||||||| || || | ||||||||||||||||||||||    |||||||||||||||| |||||||||||  |||  |||||||||||    
T  8187093 aatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgt 8187183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 1513409 - 1513477
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 110  Q
    |||||||||| ||||||| ||||| || |||||||||||||  |||||||  |||||||||||||||||    
T  1513409 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacact 1513477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 7307959 - 7307889
Alignment:
Q  40 aaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 110  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||  | ||||  ||||||||||||| ||||    
T  7307959 aaaatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcact 7307889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 8184032 - 8184092
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgat 102  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    ||||||||||||||||    
T  8184032 aatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgat 8184092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 12121459 - 12121527
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 110  Q
    |||||||||| ||||||| ||||| || |||||||||||||  | |||||  |||||||||||||||||    
T  12121459 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 12121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 1524488 - 1524602
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgtcatataatt 141  Q
    |||||||||| ||||||| ||  ||||||||||||| ||||    |||||| ||||||||||||||||| ||||  ||  || ||||||||| |    ||    
T  1524488 aatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggctt 1524587  T
Q  142 ttgcaactgttattg 156  Q
    |||||||||||||||    
T  1524588 ttgcaactgttattg 1524602  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 1548428 - 1548494
Alignment:
Q  44 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 110  Q
    |||||||| || |||| ||||||||||||||||||||||    ||||||  ||||||||||||||||    
T  1548428 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 1548494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 547010 - 546970
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgt 82  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  547010 aatgaactttgaagttcctaaattggaggtggtgaacttgt 546970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 644925 - 644873
Alignment:
Q  44 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagtt 96  Q
    |||||||| ||||||| ||||||||||||||  ||||||  ||||||||||||    
T  644925 tgaactttgaagttcccaaactggaggtgttagacttgtcatttacaagagtt 644873  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 1519144 - 1519184
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgt 82  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  1519144 aatgaactttgaagttcccaaactagaggtgttgaacttgt 1519184  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 41889555 - 41889646
Alignment:
Q  41 aaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 132  Q
    ||||||||||||||||||| ||| |||||||||||||||| |  | ||||| |||||||||||||||||||||||| ||  |||||||||||    
T  41889555 aaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgt 41889646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 41901542 - 41901627
Alignment:
Q  47 actttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 132  Q
    ||||| ||||||| ||||||||||||||||||||||  | ||||| ||||||||||||| |||||||||  ||  |||||||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgt 41901627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 32267573 - 32267482
Alignment:
Q  41 aaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 132  Q
    ||||||||||| ||||||| ||| ||||||| ||||||||||     |||| ||||||||||||| |||||||||  ||  |||||||||||    
T  32267573 aaatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgt 32267482  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 18315262 - 18315390
Alignment:
Q  29 tgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagag 128  Q
    |||||||| ||  |||||||||||||||||| ||||||||||||||||||||||    ||||| ||||||||||||| |||| |||   ||  |||||||    
T  18315262 tgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagag 18315361  T
Q  129 ttgtcatataattttgcaactgttattgg 157  Q
    ||||| ||   ||||||||||||||||||    
T  18315362 ttgtcgtaggcttttgcaactgttattgg 18315390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 27922606 - 27922515
Alignment:
Q  41 aaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 132  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||  | |||||  |||||||||||| |||||||||  ||  |||||||||||    
T  27922606 aaatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgt 27922515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 28246299 - 28246353
Alignment:
Q  44 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 98  Q
    |||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  28246299 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 28246353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 21235653 - 21235598
Alignment:
Q  44 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgat 99  Q
    |||||||| ||||||| ||||||||||||||||||||||  | |||| ||||||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgat 21235598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 17636403 - 17636443
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgt 82  Q
    |||||||||| ||||||| ||| ||||||||||||||||||    
T  17636403 aatgaactttgaagttcccaaattggaggtgttgaacttgt 17636443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 34936165 - 34936233
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 110  Q
    ||||| |||| | ||||| ||||| ||||||||| ||||||  | |||||||||||||||| |||||||    
T  34936165 aatgatctttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacact 34936233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 51120895 - 51120986
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgtc 133  Q
    |||||||||| ||||||  ||| |||||||||||||||||| |  |||||||||||||||||||| ||| |||  |||  ||||||||||||    
T  51120895 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtc 51120986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 1657361 - 1657292
Alignment:
Q  29 tgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 98  Q
    |||||||| ||| | |||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  1657361 tgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 1657292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 51764442 - 51764510
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 110  Q
    ||||||||||  |||||| || |||||||||||  ||||||  ||||||| |||||||||| |||||||    
T  51764442 aatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacact 51764510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 11936264 - 11936333
Alignment:
Q  29 tgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 98  Q
    |||||||| ||| | |||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  11936264 tgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 11936333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 11948244 - 11948313
Alignment:
Q  29 tgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 98  Q
    |||||||| ||| | |||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  11948244 tgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 11948313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 6432258 - 6432186
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttat 114  Q
    |||||||||| ||||||| || ||| |||||||||||||||    |||||| |||||||||||||||||||||    
T  6432258 aatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttat 6432186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 12102361 - 12102323
Alignment:
Q  44 tgaactttaaagttcctaaactggaggtgttgaacttgt 82  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgt 12102323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 6423327 - 6423274
Alignment:
Q  29 tgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgt 82  Q
    |||||||| ||  |||||||||| ||||||| || |||||||||||||||||||    
T  6423327 tgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgt 6423274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 6410103 - 6410031
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttat 114  Q
    |||||||||| ||||||| || ||| |||||||||||| ||    |||||| |||||||||||||| ||||||    
T  6410103 aatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttat 6410031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 32785774 - 32785846
Alignment:
Q  42 aatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttat 114  Q
    |||||||||||||| ||| ||||| ||||||||||||||||    ||||||| ||||||||||| ||||||||    
T  32785774 aatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttat 32785846  T

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