View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2165_low_3 (Length: 559)
Name: NF2165_low_3
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 31 - 557
Target Start/End: Complemental strand, 1246380 - 1245856
Alignment:
| Q |
31 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataa |
130 |
Q |
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| T |
1246380 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataa |
1246281 |
T |
|
| Q |
131 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246280 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
1246181 |
T |
|
| Q |
231 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacct |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1246180 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactacaaaacatgaaacct |
1246081 |
T |
|
| Q |
331 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
430 |
Q |
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| T |
1246080 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
1245981 |
T |
|
| Q |
431 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggt |
530 |
Q |
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| T |
1245980 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggt |
1245883 |
T |
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| Q |
531 |
aagaaggaagtcctctctcaacctgca |
557 |
Q |
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| T |
1245882 |
aagaaggaagtcctctctcaacctgca |
1245856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 31 - 557
Target Start/End: Complemental strand, 42011041 - 42010518
Alignment:
| Q |
31 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataa |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011041 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataa |
42010942 |
T |
|
| Q |
131 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010941 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
42010842 |
T |
|
| Q |
231 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacct |
330 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
42010841 |
tatatagaataagacaaaaaagaatacaa-ttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactataaaacatgaaacct |
42010743 |
T |
|
| Q |
331 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
430 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42010742 |
caaaattcagcaacaataatctactgcaacattcaatctgaatttgttaccaaactactgatatttcaaaaatcatttccctcatactctatgatgaaga |
42010643 |
T |
|
| Q |
431 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggt |
530 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42010642 |
caaaaatctgatagcataaaactctactctcacataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggt |
42010545 |
T |
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| Q |
531 |
aagaaggaagtcctctctcaacctgca |
557 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
42010544 |
aagaaggaagtcctctctcaacctgca |
42010518 |
T |
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