View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2165_low_9 (Length: 337)
Name: NF2165_low_9
Description: NF2165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2165_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 97 - 327
Target Start/End: Complemental strand, 41880834 - 41880604
Alignment:
| Q |
97 |
agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaattgaacaatataaagtt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
41880834 |
agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagttccgcttataattgaacaatataaagtt |
41880735 |
T |
|
| Q |
197 |
gcccgagttcttgtaactctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc |
296 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41880734 |
gcccgagttcttgtaactctggtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc |
41880635 |
T |
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| Q |
297 |
ataaattatcaatcaataccacagttttcat |
327 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
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| T |
41880634 |
ataaattatcaatcaataccacaattttcat |
41880604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 327
Target Start/End: Original strand, 44459367 - 44459466
Alignment:
| Q |
218 |
gtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctcataaattatcaatcaatacca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||| | |||||| ||| || ||||||||||||||||||||| ||||||||| |
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| T |
44459367 |
gtctaggagttcttgcaactctggtgtcatttctctatgttc----------tgcttccattgttagagcttcaagctcataaattatccgtcaatacca |
44459456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 41883117 - 41883076
Alignment:
| Q |
42 |
ataaaaggttaataaataagactgaaatccaaagatgattat |
83 |
Q |
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| T |
41883117 |
ataaaaggttgataaataagactgaaatccaaagatgattat |
41883076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 97 - 327
Target Start/End: Original strand, 50316199 - 50316429
Alignment:
| Q |
97 |
agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaattgaacaatataaagtt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50316199 |
agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaactgaacaatataaagtt |
50316298 |
T |
|
| Q |
197 |
gcccgagttcttgtaactctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc |
296 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
50316299 |
gctcgagttcttgtaactctggtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccaatgtgagagcttcaagctc |
50316398 |
T |
|
| Q |
297 |
ataaattatcaatcaataccacagttttcat |
327 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
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|
| T |
50316399 |
ataaattatcaatcaataccacaattttcat |
50316429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 327
Target Start/End: Complemental strand, 32957213 - 32957099
Alignment:
| Q |
213 |
ctctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctcataaattatcaatcaa |
312 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| ||||| ||| ||| ||||||||| ||| | |||| ||| ||||||||||||| ||| |
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| T |
32957213 |
ctctggtctaggagttcttgcaattctggtgtcatttctctgttttctgttgccactttcttccattgttcgagcttaaagttcataaattatcagccaa |
32957114 |
T |
|
| Q |
313 |
taccacagttttcat |
327 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
32957113 |
taacacagttttcat |
32957099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 97 - 327
Target Start/End: Original strand, 11670437 - 11670667
Alignment:
| Q |
97 |
agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaattgaacaatataaagtt |
196 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11670437 |
agtaaataattcaagacatccacagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaactgaacaatataaagtt |
11670536 |
T |
|
| Q |
197 |
gcccgagttcttgtaactctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc |
296 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |
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|
| T |
11670537 |
gcccgagttcttgcaactctggtctaggagttcttgcaactctggtgtcatttctctcttttcggtttcaattttcttccactgtgagagctttaagctc |
11670636 |
T |
|
| Q |
297 |
ataaattatcaatcaataccacagttttcat |
327 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
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|
| T |
11670637 |
ataaattatcaatcaataccccagttttcat |
11670667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 325
Target Start/End: Original strand, 28049711 - 28049808
Alignment:
| Q |
218 |
gtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctcataaattatcaatcaatacca |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||| | |||||| ||| || |||||||||||||||||||||| ||||||||| |
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| T |
28049711 |
gtctaggagttcttgcaactctggtgtcatttctttattttc----------tgcttccattgttagagcttcaagctcataaattatcagtcaatacca |
28049800 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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