View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_high_20 (Length: 412)

Name: NF21660_high_20
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_high_20
NF21660_high_20
[»] chr5 (11 HSPs)
chr5 (19-398)||(33003496-33003866)
chr5 (106-398)||(33015123-33015406)
chr5 (293-398)||(33015466-33015571)
chr5 (293-398)||(33003926-33004031)
chr5 (293-395)||(33015631-33015733)
chr5 (19-124)||(33015069-33015174)
chr5 (293-395)||(33004091-33004193)
chr5 (314-388)||(33015844-33015918)
chr5 (314-388)||(33004304-33004378)
chr5 (293-351)||(33004256-33004314)
chr5 (293-351)||(33015796-33015854)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 33003496 - 33003866
Alignment:
Q  19 acatctgatcatttaaaatagtggactaggtgggggtggaatagatgttgtaggaggtggcggtgaacttggtgttgtcggtgctgcaggtgggggtgga 118  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  33003496 acatctgataatttaaaatagtggactaggtggaggtggagtagatgttgtaggaggtggaggtgaacttggtgtggtcggtgctgcaggtggaggtgga 33003595  T
Q  119 cttggtgttgtaggtgctgcaggtggaggtggagttggtactaatggagctgcaggagttacaggtggaggtagacttggaactaatggaggtggaggag 218  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||     
T  33003596 cttggtgttgtaggtgttgcaggtggaggtggacttggtactaatggagctgcaggagttacaggtggaggtggacttggaactaatggaactggaggaa 33003695  T
Q  219 ttagaagtggacttggtattaatggtggacttggtattaatggagttagaggagttagaggtggatttgttgtgccgggccatcctggaatgccgggaat 318  Q
    |||||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33003696 ttagaactggacttggtattaatggtggacttggtattaat---------ggagttagaggtggatttgttgtgccgggccatcctggaatgccgggaat 33003786  T
Q  319 accgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33003787 accgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 33003866  T

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Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 106 - 398
Target Start/End: Original strand, 33015123 - 33015406
Alignment:
Q  106 aggtgggggtggacttggtgttgtaggtgctgcaggtggaggtggagttggtactaatggagctgcaggagttacaggtggaggtagacttggaactaat 205  Q
    |||||| |||| |||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33015123 aggtggaggtgaacttggtgttgtcggtgttgcaggtggaggtggacttggtactaatggagctgcaggagttacaggtggaggtggacttggaactaat 33015222  T
Q  206 ggaggtggaggagttagaagtggacttggtattaatggtggacttggtattaatggagttagaggagttagaggtggatttgttgtgccgggccatcctg 305  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  33015223 ggagctggaggagttagaagtggacttggtattaatggtggacttggtattaat---------ggagttagaggtggatttgttgtgccgggccatcctg 33015313  T
Q  306 gaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33015314 gaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 33015406  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 33015466 - 33015571
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  33015466 ccgggccatcctggaatgcctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcat 33015565  T
Q  393 tcttct 398  Q
    ||||||    
T  33015566 tcttct 33015571  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 33003926 - 33004031
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  33003926 ccgggccatcctggaatgcctggaataccgggccaagttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcat 33004025  T
Q  393 tcttct 398  Q
    ||||||    
T  33004026 tcttct 33004031  T

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Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 33015631 - 33015733
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  33015631 ccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgccat 33015730  T
Q  393 tct 395  Q
    |||    
T  33015731 tct 33015733  T

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Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 33015069 - 33015174
Alignment:
Q  19 acatctgatcatttaaaatagtggactaggtgggggtggaatagatgttgtaggaggtggcggtgaacttggtgttgtcggtgctgcaggtgggggtgga 118  Q
    |||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||    
T  33015069 acatttgataatttaaaatagtggactaggtggaggtggagtagatgttgtaggaggtggaggtgaacttggtgttgtcggtgttgcaggtggaggtgga 33015168  T
Q  119 cttggt 124  Q
    ||||||    
T  33015169 cttggt 33015174  T

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Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 33004091 - 33004193
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  33004091 ccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttggatcgccat 33004190  T
Q  393 tct 395  Q
    |||    
T  33004191 tct 33004193  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 33015844 - 33015918
Alignment:
Q  314 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatca 388  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||    
T  33015844 ggaataccgggccatgttggtaggcctggaacaccgggaagtccaggtatattgaaacaatccgaacttgcatca 33015918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 33004304 - 33004378
Alignment:
Q  314 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatca 388  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||    
T  33004304 ggaataccgggccatgtcggtaggcctggaacaccgggaagtccaggtatattgaaacaatccgaacttgcatca 33004378  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 33004256 - 33004314
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccggg 351  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  33004256 ccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 33004314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 33015796 - 33015854
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccggg 351  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  33015796 ccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 33015854  T

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