View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_high_23 (Length: 376)
Name: NF21660_high_23
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 35206128 - 35206471
Alignment:
| Q |
17 |
gaatctcataagctgctttatttttctgttcctctgttccgaaaactagtctccgagctaatgaccatgacgtgaattgtatcgcatgtgctgcagctgg |
116 |
Q |
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| T |
35206128 |
gaatctcataagctgctttgtttttctgttcctctgttccgaaaactagtctccgggctaatgaccatgacgtgaattgtattgcatgtgctgcagctgg |
35206227 |
T |
|
| Q |
117 |
actaccgggattaaccgtggctgcaggtttgctgatgtggagcttggatgttgaaactgaaattttgttatcataacagaactgttggataagtgtttta |
216 |
Q |
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| T |
35206228 |
actaccgggattaaccgtggatgcaggtttgctgatgtggagcttggatgttgaaactgaaattttgttatcataacagaactgttggataagtgtttta |
35206327 |
T |
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| Q |
217 |
agtgctgtgttgggaaaaagctcagtggaaatgagtctttctcctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35206328 |
agtgctgtgttgggaaaaagctcagtggaaatgagtctttctcctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgt |
35206427 |
T |
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| Q |
317 |
tgtatgtttggccagtggaaacagttacaggatctgtcattagt |
360 |
Q |
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| T |
35206428 |
tgtatgtttggccagtggaaacagttacaggatctgtcattagt |
35206471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 43985827 - 43985869
Alignment:
| Q |
17 |
gaatctcataagctgctttatttttctgttcctctgttccgaa |
59 |
Q |
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||||||| |||||||||||||| ||||||| |||||||||||| |
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| T |
43985827 |
gaatctcgtaagctgctttattcttctgttgctctgttccgaa |
43985869 |
T |
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