View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_high_28 (Length: 317)

Name: NF21660_high_28
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_high_28
NF21660_high_28
[»] chr3 (2 HSPs)
chr3 (20-317)||(38214023-38214320)
chr3 (20-317)||(38218242-38218539)
[»] chr8 (3 HSPs)
chr8 (126-317)||(42991291-42991482)
chr8 (126-317)||(35017979-35018170)
chr8 (221-262)||(33811108-33811149)
[»] chr7 (4 HSPs)
chr7 (174-303)||(37188902-37189031)
chr7 (231-292)||(32715057-32715118)
chr7 (231-292)||(32709835-32709896)
chr7 (231-292)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (231-295)||(10411404-10411468)
chr6 (231-295)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (173-289)||(53492975-53493091)
chr4 (174-289)||(53499268-53499383)
chr4 (190-263)||(53495378-53495451)
chr4 (195-281)||(53488672-53488758)
chr4 (192-262)||(53502408-53502478)
chr4 (174-289)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (195-286)||(16942656-16942747)
chr2 (195-286)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (221-262)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 38214320 - 38214023
Alignment:
Q  20 gaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  38214320 gaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgta 38214221  T
Q  120 actaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatct 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214220 actaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatct 38214121  T
Q  220 attcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214120 attcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 38214023  T

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Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 38218539 - 38218242
Alignment:
Q  20 gaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  38218539 gaagccacaacacattatgtaagtaatatatatttaagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgta 38218440  T
Q  120 actaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatct 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218439 actaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatct 38218340  T
Q  220 attcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218339 attcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 38218242  T

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Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 126 - 317
Target Start/End: Original strand, 42991291 - 42991482
Alignment:
Q  126 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 225  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||    
T  42991291 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa 42991390  T
Q  226 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 317  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42991391 gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttc 42991482  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 126 - 317
Target Start/End: Original strand, 35017979 - 35018170
Alignment:
Q  126 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 225  Q
    |||||||| |||||||| ||||  ||||||||| | |||||||||| |||||| |||||| |||| || ||||||||||||||||||||||||||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  226 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttc 317  Q
    | || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttc 35018170  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 33811149 - 33811108
Alignment:
Q  221 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 262  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  33811149 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 33811108  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 37188902 - 37189031
Alignment:
Q  174 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 273  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | || || |    
T  37188902 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaaga 37189001  T
Q  274 ctgattggtccaaagcaccctttacagctt 303  Q
    | ||||||||||| || || ||||| ||||    
T  37189002 cagattggtccaatgctccttttactgctt 37189031  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 32715057 - 32715118
Alignment:
Q  231 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 292  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcacc 32715118  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 32709835 - 32709896
Alignment:
Q  231 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 292  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 32709896  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 32718435 - 32718496
Alignment:
Q  231 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 292  Q
    |||||||| ||||||||||| ||||| ||||| || |  |||||||||||||| ||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcacc 32718496  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 10411404 - 10411468
Alignment:
Q  231 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 295  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  10411404 tggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcaccctt 10411468  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 10379826 - 10379762
Alignment:
Q  231 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 295  Q
    |||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcaccctt 10379762  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 53492975 - 53493091
Alignment:
Q  173 tgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaa 272  Q
    |||||||| |||  |||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || ||     
T  53492975 tgaatcaagtggcgttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaag 53493074  T
Q  273 actgattggtccaaagc 289  Q
    || ||||||||||||||    
T  53493075 acagattggtccaaagc 53493091  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 53499268 - 53499383
Alignment:
Q  174 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 273  Q
    ||||||| |||| | |||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || || |    
T  53499268 gaatcaaatggtgtaccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaaga 53499367  T
Q  274 ctgattggtccaaagc 289  Q
    | ||||||||||||||    
T  53499368 cagattggtccaaagc 53499383  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 53495378 - 53495451
Alignment:
Q  190 cattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggt 263  Q
    |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||    
T  53495378 catttccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  195 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 281  Q
    |||||||| || ||||||||| | ||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  192 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtgg 262  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 52591013 - 52591128
Alignment:
Q  174 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 273  Q
    |||||||  |||||||| || || || | |||| ||||||| || ||||||||||| ||| |||| ||| ||||||| ||||| || ||| | | |||||    
T  52591013 gaatcaaaaggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaa 52591112  T
Q  274 ctgattggtccaaagc 289  Q
    ||||||||||| ||||    
T  52591113 ctgattggtcccaagc 52591128  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 16942656 - 16942747
Alignment:
Q  195 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 286  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942656 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 17013321 - 17013412
Alignment:
Q  195 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 286  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013321 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 47495928 - 47495969
Alignment:
Q  221 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 262  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  47495928 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 47495969  T

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